Conserved Protein Domain Family
Gal_Rha_Lectin_SML_rpt2
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cd22835: Gal_Rha_Lectin_SML_rpt2 
second galactose/rhamnose binding lectin domain found in Scomberomorus niphonius L-rhamnose-binding lectin (SML) and similar proteins
SML is a rhamnose-binding lectin that also binds melibiose, raffinose, D-galactose, L-arabinose, D-fucose, maltose and D-glucose with decreasing affinity. It does not bind D-arabinose, L-fucose, lactose, xylose or 2-deoxy-D-galactose. SML shows strong hemagglutinating activity against rabbit erythrocytes. SML contains two tandem galactose/rhamnose-binding lectin domains. This model corresponds to the second one.
Links
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Statistics
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PSSM-Id: 438692
Aligned: 18 rows
Threshold Bit Score: 148.602
Created: 8-Jan-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
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putative sugar
Feature 1:putative sugar binding site [chemical binding site]
Evidence:
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1              #                                                                  #    # #
C0HK23        104 YLVTCEHSVAHLHCDvGQVISVYNADYGRnDHTTCSYERVpsQIQNRDCSn-pTSKVAESCSGKNNCTIEASNLVFGDPC 182  Japanese Span...
BAE02882       41 RETACEGSVATLECGhGQDIHVVSANYGRlDKSTCSDGKSdfSVRNTECSg-pADLVATRCNGKTSCTIEASNSVFGDPC 119  Nuchequula nu...
XP_005930971  217 HTVACEGSQANLHCDeGHVIVVLSAEYGRdDSTTCSYKRPpaQLSNTQCSi-pTSKVAESCNGRNSCSIKVRNSMFGDPC 295  Burton's mout...
XP_017161167   48 RVVACEGSAAQLDCDeGEVISVTSATYGRsDRNTCIAGRPanQITNVRCSs-sSNKVAESCNGKQSCSITAANSVFGDPC 126  guppy
AWP09999      132 RCVTCERTLAELKCDdGQQLVIHGATYGRgDNTTCSSGRSasELGNVNCSsevTDKVAERCNGKSSCIIEGFNLMFGDPC 211  turbot
XP_022078109  117 YSVTCENSNAHLTCGeGHTLSVLRADYGRhDKTTCTSTRPffQTQYTCCSg-pTGKVAERCNGRMSCSIKASNSEFGDPC 195  spiny chromis
XP_023188904   33 SLVACEGTVARLHCEeGQAIYVTSATYGRtDKKTCSARRPadQLKNTECFt-yAEEVGERCNGKQWCKVKASNYVFGDPC 111  southern plat...
XP_029975049 1559 NSVTCEGSTAQLKCDaGQVISIIKANYGRlDGRKCARGRPksQLNNVKCSn-pANKVSNQCDGKQTCSIRASNSVFGDPC 1637 jewelled blenny
XP_029975246  123 QRVTCEHSMAHLRCDeGLVISIHSADFGRrDQSTCSFGRPdsELRNTECFh-hVSLIAKRCNGKNSCSMRVSSLVFGDPC 201  jewelled blenny
XP_029975247  129 HVIACEHSMAFLYCDvGQVIHIYGARFGRgDKAICAYRRParLTKNVWCSn-pSNKVAARCNGKQKCSIKASKSSFGDPC 207  jewelled blenny

Feature 1         #####        
C0HK23        183 VGIYKYLEVAYVC 195  Japanese Spanish mackerel
BAE02882      120 GGTYKYLEVSYIC 132  Nuchequula nuchalis
XP_005930971  296 PGTYKYLEVVYTC 308  Burton's mouthbrooder
XP_017161167  127 VGTYKYLEVXYIC 139  guppy
AWP09999      212 VGTYKYLDVSYTC 224  turbot
XP_022078109  196 RGTYKYLDVTYTC 208  spiny chromis
XP_023188904  112 YGTYKYLEVEYIC 124  southern platyfish
XP_029975049 1638 RGTYKYLEVDYIC 1650 jewelled blenny
XP_029975246  202 YGTYKYLEVTYFC 214  jewelled blenny
XP_029975247  208 RGTYKYLEVAYVC 220  jewelled blenny

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