Conserved Protein Domain Family
Gal_Rha_Lectin_CSL1-2_RBL_SML_rpt1

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cd22833: Gal_Rha_Lectin_CSL1-2_RBL_SML_rpt1 
first galactose/rhamnose binding lectin domain found in Oncorhynchus keta CSL1-2, Silurus asotus RBL, Scomberomorus niphonius SML and similar proteins
The family includes a group of L-rhamnose-binding lectins, such as Oncorhynchus keta CSL1 and CSL2. CSL1 has hemagglutinating activity towards rabbit erythrocytes, but not human type B erythrocytes. CSL2 has hemagglutinating activity towards rabbit erythrocytes and human type B erythrocytes. Their hemagglutinating activities are inhibited by smooth-type lipopolysaccharide (LPS) from different bacterial species. The family also includes Silurus asotus rhamnose-binding lectin (RBL) and Scomberomorus niphonius L-rhamnose-binding lectin (SML). RBL, also known as Silurus asotus (catfish) roe lectin (SAL), is a lectin that binds L-rhamnose. It also binds monosaccharides possessing steric similarity to the hydroxyl group orientation at C2 and C4 of the pyranose ring structure of L-rhamnose, such as L-mannose and L-lyxose. RBL does not require a Ca2+ ion or free thiol group for its agglutination activity. SML is a rhamnose-binding lectin that also binds melibiose, raffinose, D-galactose, L-arabinose, D-fucose, maltose, and D-glucose with decreasing affinity. It does not bind D-arabinose, L-fucose, lactose, xylose or 2-deoxy-D-galactose. SML shows strong hemagglutinating activity against rabbit erythrocytes. CSL1-2 and SML contain two tandem galactose/rhamnose-binding lectin domains. RBL contains three galactose/rhamnose-binding lectin domains. This model corresponds to the first one.
Statistics
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PSSM-Id: 438690
Aligned: 24 rows
Threshold Bit Score: 128.535
Created: 7-Jan-2021
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putative sugar
Feature 1:putative sugar binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #                                                                     #   
P86178         1 TRVVTCDngeNVQFLICDs-GVIFIERALYGRtDGTTCKEGRPanqLTNTQCSqtgtLEVLSHRCNGKQVCEVNTEVfrt 79  chum salmon
BAF45140      22 ETVVTCDg--FVQRLSCDs-GVIHVNSATFGRtNSNICSVGRPqgqTVNTQCSm--vVPEVSKRCDGLSVCELNTQGlaa 96  Pacific redfin
Q9PVW8        24 ANMITCYg--DVQKLHCEt-GLIIVKSSLYGRtDSTTCSTNRPpaqVAVTTCSl--pITTIGDRCNGLPDCELKTDLlgn 98  Amur catfish
XP_007234690  42 ENVITCNg--LVQRLNCDi-GLIKVKSALYGRtDSAVCSAGRSpseIQDTKCSm--sIPEISERCDGQTACELRPDLlgv 116 Mexican tetra
RVE70229      24 ETVITCEn-eRVHTLECQsnEVISVQSSFYGRkNRNTCRQGKPrwvVSNTDCAqd-mLDFIKERCESEQRCEVPMSEvrt 101 javanese ricefish
RVE70230      26 KTVVTCEn-gRIHKLKCKknEVISVQSALYGRaDMVTCSQNRPsqqLDDTSCSasgtLNLIKERCEMKQKCQVKMRDvrn 104 javanese ricefish
RVE70231      35 GIVKTCEv-gSTHTLQCAt-GVINIQSAFYGRaDMYTCSEGRPtsqLTNTMCSlsgvEDFIRNSCDLRTSCEINMNDirt 112 javanese ricefish
XP_028309274  29 ERVVSCDlgnNVHRLSCEh-GVILVKSSLYGReNTEICSEGRTveeLTDTQCSqnqtTDLIKNRCDGRKECEMTIDDvnv 107 blunt-snouted c...
XP_018584761  22 YNVATCDg--SAQRLSCGt-GVIKIRSANYGRtNGYTCSAGVPaeqRTNVWCNqpeaYSILSQRCDGSQYCELNVGPeqf 98  Asian bonytongue
XP_024149829 260 ETVVTCEn-dRAQYLQCRgnEVISVQSALYGRaDSITCSEGRPpqqLSNTMCSqsgiLDLVKRSCELRQRCQINMSDvrt 338 Indian medaka
Feature 1         # ######          
P86178        80 sDPCVGIYKYLETTYTCLP 98  chum salmon
BAF45140      97 rDPCDGTYKYYTTNYICIT 115 Pacific redfin
Q9PVW8        99 tDPCQGTYKYYNTSFDCIN 117 Amur catfish
XP_007234690 117 tDPCPKTYKYLNTTYNCLE 135 Mexican tetra
RVE70229     102 vDPCWGTYKYIETEFTCIT 120 javanese ricefish
RVE70230     105 pDPCRGIFKYLQTDFLCVP 123 javanese ricefish
RVE70231     113 sDPCPGIYKYLQTTFNCLP 131 javanese ricefish
XP_028309274 108 sDPCNETFKYVETNFLCIT 126 blunt-snouted clingfish
XP_018584761  99 pDPCANTFKYLNTSYSCLH 117 Asian bonytongue
XP_024149829 339 sDPCWGTYKYLQTNFICLR 357 Indian medaka

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