5AFB,2JXA,6SKE


Conserved Protein Domain Family
Gal_Rha_Lectin_LPHNs

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cd22826: Gal_Rha_Lectin_LPHNs 
Click on image for an interactive view with Cn3D
galactose/rhamnose binding lectin domain found in latrophilins
Latrophilins, also called lectomedins or latrotoxin receptors, belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: latrophilin-1 (LPHN1), Latrophilin-2 (LPHN2), and Latrophilin-3 (LPHN3). The LPHN1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. LPHN2 and LPHN3, although sharing strong sequence homology to LPHN1, do not bind alpha-latrotoxin. While LPHN3 is also brain specific, LPHN2, is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. All members in this family contain a galactose/rhamnose-binding lectin domain at N-terminus.
Statistics
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PSSM-Id: 438683
Aligned: 14 rows
Threshold Bit Score: 126.276
Created: 4-Jan-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:rhamnose binding site [chemical binding site]
Evidence:
  • Structure:2JXA: Mus musculus latrophilin-1 in complex with rhamnose; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #                      #                                                  
5AFB_A         11 RRELSCESYPIELRCPg--TDVIMIESANYGRTD--DKICDSdpaqMENIRCYLPD--AYKIMSQRCNNRTQCAVVAGPd 84   human
2JXA_A          8 RRELACEGYPIELRCPg--SDVIMVENANYGRTD--DKICDAdpfqMENVQCYLPD--AFKIMSQRCNNRTQCVVVAGSd 81   house mouse
XP_001625964    1 KSEYACQGSKARLRCKagsSTVIEILNANYGRTQsgSAVCPHk--nATNTRCVGKQ--AFAKIPKKCNGKPRCNVIIDEt 76   starlet sea a...
XP_002124553   49 HDEIACQDYEMTLRCPg--SDVINVQMASYGRRD--DRTCASspenMMDTHCDLPG--VLAIVANRCNGKTECTLTVGEg 122  vase tunicate
NP_001231978   33 PSEMACEGYPIVLRCPg--TDVIQVVAAEYGRQT--ADTCATtpekMRNTACYLPE--AFDIMSSKCNNQTQCKLDVSDe 106  vase tunicate
XP_019634349   40 NREIACEGLVINLRCPs--HRVIYIEGANYGRTD--NLTCARnprrMRNTNCRHPD--SLKTMADRCNSHSSCKVGALDa 113  Belcher's lan...
XP_020912188   28 KTIIACQGSKVRIRCKn--SNIIMIFSAFYGRVPg-REICYSd--kIFTTKCSLEKgkALEVVEKRCSNRSRCNVRADNs 102  
XP_022097103   46 LYSSVCEGSTMNLRCLs-sEHILIIESANFGRTD--TDTCPRg--pNNDTECIQPS--SFEIVAERCSNKKHCAVPATNq 118  crown-of-thor...
PIK36186       23 YYTSVCEGKTMDLQCPg--ERVILIESANFGRTD--HVTCLGfg-rVDDTNCESPA--TFAVVSPMCDYKTVCSIRATSg 95   Japanese sea ...
RMX39072        5 KSRFACEGEKLRLRCEs--DYVLRVFNAKYGRLEpgSSICPHe--nITDLNCQAEG--VLLKVMAMCTNRRRCIIKADSs 78   Pocillopora d...
Feature 1             # ######        
5AFB_A         85 -vFPDPCPGTYKYLEVQYEC 103  human
2JXA_A         82 -aFPDPCPGTYKYLEVQYDC 100  house mouse
XP_001625964   77 ffTEDPCPGTFKYLHVIFRC 96   starlet sea anemone
XP_002124553  123 -iFEDPCPGTRKYLSATWEC 141  vase tunicate
NP_001231978  107 -hFPDPCPGTFKYLHVTFSC 125  vase tunicate
XP_019634349  114 tfGGDPCPKTYKFLEVHFKC 133  Belcher's lancelet
XP_020912188  103 -mFPDPCPGTFKYMTIIYYC 121  
XP_022097103  119 -iFGNPCPDIYKYLEVQFQC 137  crown-of-thorns starfish
PIK36186       96 -iFGNPCPGTFKYLAVLYEC 114  Japanese sea cucumber
RMX39072       79 -fFRDPCPGTYKYLEVIYGC 97   Pocillopora damicornis

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