Conserved Protein Domain Family
OTU_plant_OTU1_2-like

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cd22793: OTU_plant_OTU1_2-like 
OTU (ovarian tumor) domain of deubiquitinating enzyme OTU1 and OTU2 from plants and similar proteins
Deubiquitinating enzyme OTU2, also called OTU domain-containing protein 2, is a deubiquitinase (DUB) or ubiquitin thiolesterase (EC 3.4.19.12) that catalyzes the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. OTU2 exhibited equivalent binding affinities for K48- and K63-linked ubiquitin chains and no cleavage activity toward linear UB chains. It may also be involved in endoplasmic-reticulum-associated protein degradation (ERAD). OTU2 belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad.
Statistics
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PSSM-Id: 438614
Aligned: 13 rows
Threshold Bit Score: 256.868
Created: 23-Nov-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putativeactive site
Feature 1:putative polypeptide substrate binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #                                        ## #     #  #      ###### 
Q9LPT6         3 GIIVRRVIPsDNSCLFNAIGYVMdkd----knkAPELRQVIAAAVASNKEKYnEAFLGKLNEEYCAWILnPDKWGGAIEL 78  thale cress
ABK24181       4 GLVVRRVIPaDNSCLFNAVGYVMend----rnrSSELRQVIATAVGNDPVHYnEAFLGKPNEEYCAWILdPEKWGGAIEL 79  Sitka spruce
XP_022839619 135 MHAVRRVIAsDNSCLFNAVAYCVers----lkeATRLRRVVADAVAADAATFsEGFLGKSPKAYVEWITkPNSWGGQVEL 210 Ostreococcus tauri
XP_002674142 135 SVVIKRVIDsDNSCLFNAFAYCLegcesrkkkrAPALRRVIRDWILNDPIQFnEAILGQSPKAYCEWIMkDNSWGGSLEI 214 Naegleria grube...
Q55BI3       121 GYATRRVTDdDNSCLFSAVAYVLedkn---rlkGYSLRALIAQNVKSDPFEYnEAVLGKSNEGYCNWIQnPKNWGGAIEL 197 Dictyostelium d...
PSC76057     187 TAVTRRIIDsDNSCLFNAVGYVTqhs----rklAPQLRQVIADAVLGDPFEWnEAVLGKEPAEYCRWIKdPSKWGGAIEL 262 Micractinium co...
XP_002979643   4 SVVMRRIIPaDNSCLFNAVGYVMehn----kskSSELREVIAATVISDPESYnEAFLGKPNGDYCQWILnPEKWGGAIEL 79  Selaginella moe...
PNW79281     208 SCVVRRVVDsDNSCLFNAVGYVMegs----rstAARLRRVVADAVRSDPFTFnEGFLGKAVEVYCDWIQqPDKWGGAIEL 283 Chlamydomonas r...
XP_011401504 176 SCLVRRVIDaDNSCLFNAVGYTMesgl---rykAPVLRQMIVEAVLADPGQWsAAVLEKDPVDYCAWIDdPHHWGGAIEL 252 Auxenochlorella...
XP_024365994  51 SVVVRRVIPsDNSCLFNAVGYVMdkd----khkAKELRQVIAATVLSDPTTYsEAILGKPNQEYVEWISnPDKWGGAIEL 126 Physcomitrella ...
XP_007510830 185 TVAVRKVIDaDNSCLFNAIGYVFfrs----lakAKELRKVVHDAVLSDPDTFsEATLGKSPKEYAEWVLqPNSWGGQVEL 260 Bathycoccus pra...
PRP86231     122 GTVVRRVVDsDNSCLFNSIGYVLegrd---rkvGPRLRKIIVDTIASDPDEYnEAILGKTNTEYRNWLLkDTSWGGGIEL 198 Planoprotosteli...
GAX85176     105 ACVVRRPIPaDNSCMFNAVGYVMhhs----kskASFLRSVVAREVSSDPKEYsEVFLGMNNAAYCAWIMnRVNWGGGIEL 180 Chlamydomonas e...
Feature 1                           # # ####           # ####                                    
Q9LPT6        79 SILADYYgREIAAYDIqTSRCDLYGQTrn-ydERVMLIYDGLHYDALALSpfega-eedfDMTIYPvgk--drSIGSIEG 154 thale cress
ABK24181      80 SILADYYgREIAAYDVqTARCDLYGQGkg-ytERVMLIYDGLHYDALAVSpfeda-pdvvDQTIFPinr--dgSIGVAEA 155 Sitka spruce
XP_022839619 211 FILSKYYrVEIAAYDIqTERCDIYGEGeg-ynDRIMVIYDGLHYDALVLHpvfg--gadvSRDVTRv------PPGVALP 281 Ostreococcus tauri
XP_002674142 215 MILSQFYnIRVDSFDVtSNRRDVYGEGdplikGKILLLYDGIHYDALAINpvpqg-peelDITILPa------DDDISST 287 Naegleria grube...
Q55BI3       198 SILSNHYkVEIAAFDIsTQLMYCYGEDrk-ytERVYLIYDGIHYDALSICltkng-pedfDITRFSv------DDKDSLA 269 Dictyostelium d...
PSC76057     263 SILSQHLkAEIAAFDIqTKRCDVYGQGag-ycERVMLIYDGLHYDALAVAafhga-pesqDVTRLPss---gpRCEAVMA 337 Micractinium co...
XP_002979643  80 AILSAYYrREIAAYDIqTTRCDLYGQDks-yqERVMVIYDGLHYDALALApfaga-pedvDQTVFKvdk--ygHIGPAER 155 Selaginella moe...
PNW79281     284 FILAQHYkREIAAFDIrTKRCDIYGQDkg-ypDRVLLIYDGLHYDALAVAafaga-peelDVTCFEpd---taGGRAITA 358 Chlamydomonas r...
XP_011401504 253 SILSKRYgRQIAAFDIqTQRLDLYGSEhadytERVLVLYDGLHYDALAVSpfpga-pedmDATVFPvd---grRTREVMA 328 Auxenochlorella...
XP_024365994 127 AILSDHYgREIAAYDIqTKRCDLYGQGkg-yiERVMLLYDGLHYDALGLApfpga-peevDQTIFSvdk--ngNIGSASR 202 Physcomitrella ...
XP_007510830 261 FVLSTHLrKQIAAYDVqTGRVDVYGEDrfphsERGHLIYDGLHYDALVFAypgledvsdtHVTVVDcslepisKINGFDR 340 Bathycoccus pra...
PRP86231     199 SILADYYqCEISAFDIkTTKVYNYGEGkg-ykQRVFLIYDGIHYDAMAFTfdpsf-pedmDITIFSp------KDDAATN 270 Planoprotosteli...
GAX85176     181 SIMAKHYgREIAAWNIeTAKGLVFGEEsg-yqKQVMLIYNGIHYDALAISpgpka-peseDVTEFNpr---tkRGKMIVA 255 Chlamydomonas e...
Feature 1                    
Q9LPT6       155 LALNLVKDQQRK 166 thale cress
ABK24181     156 LAESLVKEDQRR 167 Sitka spruce
XP_022839619 282 AVQRLVREQHAS 293 Ostreococcus tauri
XP_002674142 288 KALELVKQLHNQ 299 Naegleria gruberi strain NEG-M
Q55BI3       270 KMKVLIEKEFKA 281 Dictyostelium discoideum
PSC76057     338 GAAALTEAAHKA 349 Micractinium conductrix
XP_002979643 156 LAVKLVEESHRN 167 Selaginella moellendorffii
PNW79281     359 AAEKLVEATNAA 370 Chlamydomonas reinhardtii
XP_011401504 329 AAGRLVAAAHDA 340 Auxenochlorella protothecoides
XP_024365994 203 LAERVVEEAHRA 214 Physcomitrella patens
XP_007510830 341 KARALAKKDQEQ 352 Bathycoccus prasinos
PRP86231     271 KAMKLVQEANKA 282 Planoprotostelium fungivorum
GAX85176     256 AAQKLVELTNKG 267 Chlamydomonas eustigma

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