Conserved Protein Domain Family
OTU_RDRP-like

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cd22792: OTU_RDRP-like 
OTU (ovarian tumor) domain of the potexviruses/carlaviruses RNA replication protein family
RNA replication polyprotein (RDRP) is a viral homolog of ovarian tumor protease (vOTU), which displays RNA helicase (EC 3.6.4.13), RNA-directed RNA polymerase (EC 2.7.7.48), viral methyltransferase, Fe(2+) 2-oxoglutarate dioxygenase and protease activities. The central part of this protein possibly functions as an ATP-binding helicase. It is an RNA-directed RNA polymerase involved in viral RNA replication. It also acts as a thiol protease that cleaves the polyprotein. This subfamily belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad.
Statistics
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PSSM-Id: 438613
Aligned: 62 rows
Threshold Bit Score: 70.3292
Created: 20-Nov-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putativeactive site
Feature 1:putative polypeptide substrate binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                                             #  #                 ###
P17965        884 KRVSGPGDGCCCWHSFAYLVgm---hHMELKRLCTSHVf----------eNAALNVELEQCKa-----------sGAFVT 939  Potato virus ...
Q00106       1285 KRVYIPGDGNCLYNTLRFIAgadgesAIDFKKELLDDIrkyvrn-qdpaeRDLILTEIDNLAg-----------pNVYGS 1352 Ictalurid her...
TXC15288      179 KRVPTPGDGNCLYYALKGIFnyk-ksAIHLKNHVLDYMatqvd--nwalgDDTESVEKLRQK-------------NVYGN 242  Salmonella en...
PCG75688      105 RITDIPGDGNCLFHSLIRVLqlk-isTCDLRRLLRDSPyl---------nSCHNPQEAYNILss----------nNEYGD 164  tobacco budworm
YP_009551524  692 VSVEVPGDGNCFYHCLIKALels-vsPNAVRNRLSKSKyvdvlcstvisdSLTIDLEARNELinrlspvqvpsdrSRWAN 770  Tea plant nec...
YP_009551587   26 RLVQVPGDGWCLLHSLAKSKds---sPEHLFIEMMDYLret------irdNPVNGEDLKKMLhay-------ldkNVWFD 89   Melon chlorot...
AVP72238     1434 KRVYIPGDGNCLYASLRFFAgadtrtVEEYKMKLLLDIeh---------aTENLDQETRAIMmgele---nlrkrDVYGS 1501 Silurid herpe...
ATW76030      681 QHISVAGDGNCLYNCLVKAGlyrgitVCDLKARLRDSPfffev---dklaTDEGDTEFVDSLyr----------dGVFGN 747  Hibiscus-infe...
RVE40724      314 RLIDIPGDGNCLFYSIIEVLrlr-itPSELRKKLLESRyf---------hTCQNPNNARFILvs----------eSEFGD 373  striped riceb...
OXU18630      308 TDIPSHPPGNCLFYSLIKCMelr-lsALELRARLANSPal--------khCGCPEETLQILLs-----------pTEFGD 367  Trichomalopsi...
Feature 1         #                                # #                 #  ###      
P17965        940 HaAILATALRLRAEIRVHNAg--------tGRVHRFAPKqk-----nMALDLWLESEHYEPQVLR 991  Potato virus M (strain Russian)
Q00106       1353 GdLISFFQLLRGVGVTVVSWdk------igGRLVKLVATnqe--gipPEYIILFTNSHYEPLVTE 1409 Ictalurid herpesvirus 1 (str...
TXC15288      243 AtVLAMAQRLFQRSIYVITWdvtn---kklVQISTMTDTny-----pPIGFLFYVNAHYEQLISS 299  Salmonella enterica subsp. e...
PCG75688      165 LdCIHLFSKMYNQNICVHFHyynvissnedTRFCHFKANdt-----hNWIHLDLRDLHFTPYFSD 224  tobacco budworm
YP_009551524  771 DtVIALAALEYSVAICVHKRstqy---eynGHMHSRQGNec----sgTIIHLKYNDNHFALYVEN 828  Tea plant necrotic ring blot...
YP_009551587   90 DtLIILFSCCFRTTVQVFSE----------QGLMKYEPEtyktvvdlRYDAPNLKNGHYSIYEDC 144  Melon chlorotic spot virus
AVP72238     1502 GdIIDHFQALAGINISIVTWndd-----igKLVAVNGVKpla---tpPCGALLYLNQHYEPLVPM 1558 Silurid herpesvirus 1
ATW76030      748 KfTLMLIAKTFYINICVHLVfr-------eTTFMRFTGNkg-----sRYIHLQLRDQHYDLLIPH 800  Hibiscus-infecting cilevirus
RVE40724      374 LdCLSIFSKEYNQNICVHFYffntntrkekVWFCYFIVNdt-----qNFIHLHLRNQHFTPYIEV 433  striped riceborer
OXU18630      368 AdCAFVFSKEFNQNICVHYHqdn-----geLDFWHITANaf-----sNYIHLHLTSNHLTPLLGA 422  Trichomalopsis sarcophagae

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