Conserved Protein Domain Family
OTU_VRTN

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cd22791: OTU_VRTN 
OTU (ovarian tumor) domain of vertnin and similar proteins
Vertnin (VRTN) is an OTU domain-containing protein that is required for the development of thoracic vertebrae in mammals. OTU domains typically function as deubiquitinases (DUBs)/ubiquitin thiolesterases (EC 3.4.19.12) that catalyze the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. These DUBs may play important regulatory roles at the level of protein turnover by preventing degradation. Vertnin and some subfamily members do not possess the conserved catalytic residues and may not have DUB activity. VRTN gene is associated with variations in vertebral number.
Statistics
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PSSM-Id: 438612
Aligned: 44 rows
Threshold Bit Score: 112.698
Created: 20-Nov-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Feature 1:putative polypeptide substrate binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #                                                                    
Q9H8Y1         74 MLPLVCKGEGSLLFEAASMLLWGda--gLSLELRARTVVEMLLHRHYYlqgmidskvmlqavrys----------lcsee 141  human
KXJ20990       82 FVPLRSTGNGNXLFNSASILLSNde--eQADLLRVLVTCELIVYSDFYaqhpqmsemtncnsysikn-------iipill 152  
XP_013388573  131 HRPLAIGGDGNCLYRALSAGLYGte--rYHLHVRLITALEMITFPDEYnihsvnytg----------------------- 185  Lingula anatina
XP_029209998   12 IKPIKTTGDGNCLFNAASIAICKse--tLAIELRLRTALELLTNADFYgshpivssmdlttlcgkrwpkegiydavifsn 89   Acropora mill...
XP_028418296  426 WEPLGVCGDGNCLFRSVSVSISDnqsesLHQWLKLWCIVHGCVNEHFYikqfladadrvdgflslit-------dddvyg 498  Dendronephthy...
XP_002588414  144 HCPVFVRGDGNCLYRAVSRALYGde--kKHLHIRLLTCLEMIKFPEFYdanspnykn----------------------- 198  Florida lancelet
XP_002588153  314 HEPLRVAGDGNCLFRALSLGLFGke--dYHVLIRLLTALEIFSYQAYYdfkdpnnid----------------------- 368  Florida lancelet
ROT70827      102 HTPLQIHSDGNCLYRAISRGMFGye--eEHALIRLLATLEIAEHREFYdytavnfid----------------------- 156  Pacific white...
XP_026693907  141 HYPINAIGDGNCMYRAAAIALFGtq--eFHVQLRLAVVLEVLKYPEFYctkkskfi------------------------ 194  vase tunicate
KXJ10539        1 MEPVVVDRDGNCLFHSLAVXCSKdg-hdDYAIIKLGAVVDGCLNELSHiekimehvdpqtiihtla--------senilt 71   
Feature 1                           #  #          ####                           # #         # ## 
Q9H8Y1        142 spemtslppatlEAIFDADVKASCf----pSSFSNVwHLYALASVLQRNIYSIYPmrn---lkIRPYFNRVIRPRRCDHv 214  human
KXJ20990      153 sdematkiydgnLKNYPKAITYLArhiskpYVFASPlILMALSSVIQRPISSIYPnfss-cvrIKNGIHRVFYPRQVYTs 231  
XP_013388573  186 ----klagdaafVESYADELGAVCa----pGRWSGLiHLYAASAALRVPLRSYCPpilh-teyLSMPLTRVIHGRGVSTk 256  Lingula anatina
XP_029209998   90 taarvharegfqKALQHEIYNTLHn-----RRYSGIlQIMGLSSATGCEVKLVYPdkr---hsLLPLLTATYRPRVGDMq 161  Acropora mill...
XP_028418296  499 glkdnmtmndrvSYVYMREIMKTSv----dGRYSGYlQIVLLAGLLKTTICQHCSa------pGYELYNTEICPPNGST- 567  Dendronephthy...
XP_002588414  199 ----ligsdvfgKPIYFRLLADALt----pQEWGETiHVYAISSALHLPIETFCPhinr-phmVSAPLCRKVCGRDVDTt 269  Florida lancelet
XP_002588153  369 ----lvkddrveKPDYEKLLKTVTgv--sdGGYSYQvTVYAASAALGVAIQTYLPptglnmelASDPHTRKVHGRGVRPt 442  Florida lancelet
ROT70827      157 ----lvkdnqivSAPYTTLLKEAAt----lTHYSEMlHIYAVSAATGLALRSYCPptin-aeyLSAHLTRKKCGRRVGRv 227  Pacific white...
XP_026693907  195 -----lpdvnvvTPYYKDVCFSASr----iNGYADLiHIYALSAAVRHKFTSYRPtigp-ldrRGIVYTRDIKGRDINSr 264  vase tunicate
KXJ10539       72 slpexlsgieriREVFRRGVMATVm----nGRFSGLlQVQMASNFLGTPVTMHCTe------pGSEAYNRTIAPMKTSDv 141  
Feature 1                                              
Q9H8Y1        215 -----pSTLHIMWAgqplt-----shffrHQYFAPVV 241  human
KXJ20990      232 gnalnrPSVSIMWTntslcv----qnpwkPNHFVPLV 264  
XP_013388573  257 h----hPEITIMWTsssvpa---sqddfrPDHFAVLI 286  Lingula anatina
XP_029209998  162 q----lPSITIMMTdasgwtd--rskefqVNHFVPMV 192  Acropora millepora
XP_028418296  568 ------ESIHLLWCqls---------ggtINHIVPML 589  Dendronephthya gigantea
XP_002588414  270 q----dAAFTLMWTmtyepld--yrdgfkPNHFCVLH 300  Florida lancelet
XP_002588153  443 s----dTAVTVMWTqagfak----ghnfhADHFVVLK 471  Florida lancelet
ROT70827      228 s----iPALTVIWSqasvpa---tassfkPNHFVLLG 257  Pacific white shrimp
XP_026693907  265 n----kFGGILMWTstdlhstkpnirkflPNHFCLLR 297  vase tunicate
KXJ10539      142 -----vPAVNILWCkltd-------dakaINHFAPLI 166  

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