2PI8,2G5D,2G6G,3CZB,2PNW,3CZB,6QK4,2AE0,2GAE,2PIC,2PJJ


Conserved Protein Domain Family
DPBB_MltA-like

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cd22785: DPBB_MltA-like 
Click on image for an interactive view with Cn3D
double-psi beta-barrel fold of membrane-bound lytic murein transglycosylase A (MltA) and similar proteins
MltA, also called murein hydrolase A, is a murein-degrading enzyme that may play a role in the recycling of muropeptides during cell elongation and/or cell division. It degrades murein glycan strands and insoluble, high-molecular weight murein sacculi. Bacterial lytic transglycosylases (LTs) are classified into 4 families: family 1 includes slt70 MltC-MltF, family 2 includes MltA, family 3 includes MltB, and family 4 includes proteins of bacteriophage origin. MltA is distinct from other bacterial LTs, which are similar in structure and sequence with a lysozyme-like fold. MltA is a kidney bean-shaped monomeric protein comprised of two domains separated by a large groove, where the peptidoglycan strand binds. Domain A is made up of an N-terminal and a C-terminal portion, which corresponds to a double-psi beta-barrel (DPBB) fold. Domain B also has a beta-barrel fold topology, but it is inserted within the linear sequence of domain A. This model corresponds to the DPBB fold that consists of two interlocked "psi-structure" motifs related by a pseudo-2-fold axis. It is involved in substrate binding and catalysis.
Statistics
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PSSM-Id: 439262
Aligned: 92 rows
Threshold Bit Score: 64.2
Created: 9-Nov-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Comment:Ligand binding induces conformational change of the domains, facilitating tight binding of the oligosaccharide by both domains.
  • Structure:2PI8; Escherichia coli MltA binds chitohexaose; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ###                                                                          
2PI8_A        96 VQFTGYYTPviqarhtrqgefqypiyrxppkrgrlssraeiyagalsdkyilaysnslxdnfixdvqgsgyidfgdgspl 175 Escherichia col...
CDW73033      23 ADLTYYWICfesdesgsgpkdtvlktcggkniatvtnhyakrirv----------------------------------- 67  Stylonychia lemnae
RUP48712     127 PEGTFYWRAtssdypggprvsiatcdgktiakvnknfadnlvmeg----------------------------------- 171 Jimgerdemannia ...
RLE45322      65 YKLTFYWITrevdssgpktekilivspetgeenptevsvdfkrh------------------------------------ 108 Candidatus Woes...
OGP16142      50 FSITFYWVEreedhsgnqtfsiqtydstsnttseidtaretfveaastqg------------------------------ 99  Deltaproteobact...
WP_082422517 416 CKMTFYWIFdsekeewkieggkecfmgtdlstcllqgetydtglikrat------------------------------- 464 Aquimarina longa
TNE99615      28 VQLTWYWRVdhdrlpptdtmyevrnregevigvageerlkriwm------------------------------------ 71  Deltaproteobact...
TAK26967      29 FQLTRYWIAhetprpddrqaarvldpqgrtltwctsrfaealam------------------------------------ 72  Myxococcaceae b...
OZJ04203      39 VALTNYWIPkqgtedygsqmltgadttallslddsviakvpkvl------------------------------------ 82  Bifiguratus ade...
KXN72822      55 IKLTYYWITkeslfpegkdkeikvcssdgekgdkviskvspef------------------------------------- 97  Conidiobolus co...
Feature 1                                                                             ###        
2PI8_A       176 nffsyagknghayrsigkvlidrgevkkedxsxqairhwgethseaevrelleqnpsfvffkpqsfapVKGASAVPLvgR 255 Escherichia col...
CDW73033      68 --------------------------------egtgklndgrvlniggcdcgnsfscfeeidqhkypyGIGPQDNPIfpY 115 Stylonychia lemnae
RUP48712     172 ---------------------------------sgrlhngvlvntgacncapgkyncfvvldrkhfkwGQSARGRPLrpF 218 Jimgerdemannia ...
RLE45322     109 ---------------------------------ldregtailedgrlinvirrnekkryldismkyptGLGCRNNMLtpF 155 Candidatus Woes...
OGP16142     100 ----------------------------nglltdgtiisyqddcsgfvastvpygvcfeivnvltypyGRSREGTALspY 151 Deltaproteobact...
WP_082422517 465 -----------------------------vegtayvkrkngkkslinlisenngapkfieldqtkykwGVDMNGDELklF 515 Aquimarina longa
TNE99615      72 ---------------------------------egsgfladgtlinlvdvfefhnstymvvdqdrfpwGLDSLGNALtpL 118 Deltaproteobact...
TAK26967      73 ----------------------------------egtgrswdgrlfnwssrregrscyievdpalypfGIGVAGFALvpY 118 Myxococcaceae b...
OZJ04203      83 ---------------------------------ydrcqmegtcklangdlinlannydrfeilgkgtpFGSGAYDPLvpF 129 Bifiguratus ade...
KXN72822      98 -----------------------------------yeslhtegtgklrdgkfvncgnddctcfnkvpgPQGNKGDILniY 142 Conidiobolus co...
Feature 1           #                                        ###                                 
2PI8_A       256 ASVASDRSi--iPPGTTLIAEvplldnng-kfngqyeLRLXVALDVGGAIKgQHFAIYQGIGpea--------------- 317 Escherichia col...
CDW73033     116 SSVAENDF----PIGTTLYVQkldgltlp-gtggqkhNGCVSVDDRGYGFGsNHIDFFVAKEkyy--------------- 175 Stylonychia lemnae
RUP48712     219 VSIASNDL----KPGSKIFVPqivgwvt--pvtgkkhNGCLLVDDTFSATTdHHIDFYSLELkyyk-------------- 278 Jimgerdemannia ...
RLE45322     156 ISVAVNENnpelKFGDQIYIPdvkgtpl---pdggkhDGLFLVDDTGKGLSrDQIDVFVFIKknwq-------------- 218 Candidatus Woes...
OGP16142     152 RGVAVGTSs--iTNGTELYIPlldevempgteggfthDGCVTADDTGAGSTeIKLFVYRESNydsl-------------n 216 Deltaproteobact...
WP_082422517 516 KTIAVDPDl--lPTGSKVYIKeydglql---pdgnihDGIFYANDTGWSIKgNHIDVFAGSYkwy--------------- 575 Aquimarina longa
TNE99615     119 KTIAVDPDv--iPLGSKVYIPefdqnpn--vpqlvshDGCFVASDTGHDFTgKRIDVFSGTHdeyks------------i 182 Deltaproteobact...
TAK26967     119 RSLAVDPRf--vPLGSTVELPeligmpl---pdgsthDGCFVAVDRGGAINgHHLDLFLPSPdahr-------------a 180 Myxococcaceae b...
OZJ04203     130 VSVASNDL----SGHTTVYIKefdgltl---pngethNGCVRVDDNGWSFGgCHLDLFVMSYeyyanfnwpstittniqs 202 Bifiguratus ade...
KXN72822     143 TSVASKSL----KVGTKIYIKefdgfkl---psgelhNGCVKVEDTGYGLErDQIDLFSYYKa----------------- 198 Conidiobolus co...
Feature 1           ##  #        
2PI8_A       318 ghrAGWYNHYGRVWVL 333 Escherichia coli K12
CDW73033     176 eniDNILKITKADYQR 191 Stylonychia lemnae
RUP48712     279 klnTAHPTSTIDIYAG 294 Jimgerdemannia flammicorona
RLE45322     219 nfqSHLKPHEKRFFVY 234 Candidatus Woesearchaeota archaeon
OGP16142     217 etlGSSATYTSYIYTD 232 Deltaproteobacteria bacterium GWA2_50_8
WP_082422517 576 keiASQLPESLTVHVL 591 Aquimarina longa
TNE99615     183 etiLQTWNRKVRIYFN 198 Deltaproteobacteria bacterium
TAK26967     181 lqrMGWLPDSVHVVLD 196 Myxococcaceae bacterium
OZJ04203     203 ctvKDYNNGPINDWLN 218 Bifiguratus adelaidae
KXN72822     199 --nYERVNKDLRLESV 212 Conidiobolus coronatus NRRL 28638

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