Conserved Protein Domain Family
OTU_VCIP135

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cd22769: OTU_VCIP135 
OTU (ovarian tumor) domain of deubiquitinating protein VCIP135
Deubiquitinating protein VCIP135 is also called valosin-containing protein p97/p47 complex-interacting protein 1, valosin-containing protein p97/p47 complex-interacting protein p135, or VCP/p47 complex-interacting 135-kDa protein. It is a deubiquitinase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that hydrolyzes 'Lys-11'- and 'Lys-48'-linked polyubiquitin chains. It is necessary for VCP-mediated reassembly of Golgi stacks after mitosis, and may play a role in VCP-mediated formation of transitional endoplasmic reticulum (tER). VCIP135 controls Golgi membrane dynamics in the cell cycle and is required for Golgi and ER assembly. It belongs to the OTU family of cysteine proteases that use a conserved cysteine and histidine, and in most cases an aspartate, as the catalytic triad. Not all members of this subfamily contain the active site. It is closely related to proteins classified as family C64 cysteine protease by MEROPS, such as TNFAIP3, ZRANB1, and OTUD7A/B.
Statistics
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PSSM-Id: 438606
Aligned: 20 rows
Threshold Bit Score: 361.229
Created: 6-Nov-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putativeactive site
Feature 1:putative polypeptide substrate binding site [polypeptide binding site]
Evidence:
  • Comment:based on the structures of other family C64 proteases with bound ubiquitin

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   ##                                    
Q96JH7        164 GDRAFLIEPEHVntvGYGKDRSGSLLYLHDTLEDIKRANkSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRENLK 243  human
XP_019851333  156 GSRAFAIEESMLdikGYGEDKSGSLRYLKKTLDELSTFNgGRKCLVPIHADGDGHCLVHAISRCLVGRELFWHALRTNMQ 235  Amphimedon qu...
ELT92345      129 ASRAFLIKPEHIevtGYGRDSTGSMGYLEQTLAAVRQSNdGEERLVPIHADGDGHCLVHAISRALIGRELFWHALRQNLK 208  Capitella teleta
XP_013065753  124 ADRAFLLDPEHMnvpGYGRDKSGSVEYLKQTLGIIKKCNeNEERLVPIHADGDGHCLVHAVSRALVGWQLFWHPLRMNLI 203  Biomphalaria ...
XP_002108607  122 ADRAFRIHSDRIailGYGRDRSGSIEYLKDTLKVLNHLC-NQEVIVPIHVDGDGHCLVHAISRALVGSELFWHPLRVNLR 200  Trichoplax ad...
RMX50409      126 GDRAFQIELEHVdtaGYGRDSTGSQSYLEQTLQAIKVVNdNEERLVPVHVDGDGHCLVHAISRALVGREIFWHALRANLK 205  Pocillopora d...
PNF31413       26 SDRSFLISAEHLdilGYGRDQSGSLSYLAETLRRIEEANgDRKVLVPIHADADGHCLVHAVSRALVGRQLFWHPLRTHLK 105  Cryptotermes ...
EEC04585      149 ADRAFRIDPELVevaGYGRDVSGSLSYLRGTLALVRAHNdGEDRLLPVHVDGDGHCLVHAVSRALVGRELFWHPLRCNLK 228  black-legged ...
XP_002126512  129 GSRSFHISPTHIdveGYGKDRTGSINYLQTLLDTLKTAHnNEERLIPIHADGDGHCLVHALSRALIGRELFWHGLRINLQ 208  vase tunicate
RZF48111      142 GDRTFRMESRLLdipGYGYDQTGSTNYLADTLQLLKHYNdDKEVLVPLHVDGDGHCLVHAVSRALVGRELFWFPLRLGLK 221  small brown p...
Feature 1                              #      #               ###                     #           
Q96JH7        244 QHFqqHLARYQALFHDFIDAAEWEDIINECDPLFVPp--eGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSsGDYSAT 321  human
XP_019851333  236 SHLksHHDWYVSKLKGFSYDEDWAEIISEADPDYEPp--pGVSIGLRNVHIFALANVLRRPIIVLDGNTGIASdSEYSCI 313  Amphimedon qu...
ELT92345      209 QHFteQLTAYQELFRDFFDADEWKDIIAESDPEYLPk--gEELMGLRNIHIFGLANVLRRPIVLMDSLRGMQSsGDYTGV 286  Capitella teleta
XP_013065753  204 HHFrtNFPKYQMQFQDFIDESEWQLIIRECEPDFIPi--gAEPTGLRNIHIFGLANVLKRPIILLDSLEGIQSpGDYSAI 281  Biomphalaria ...
XP_002108607  201 FHLkcNQSRYRSLLRDFISDDEWQEIIAEADPDFVPr--nGESLGLRNVHIFGLANILKRPILLLDNLEGMQSsVDYSAI 278  Trichoplax ad...
RMX50409      206 RHLqtELHKYKGLFRDFIHDDEWKDIIAEADPYFEPpptsAEGLGLRNIHLFGLANVLHRPIILLDSVTGMQSsGDYTGI 285  Pocillopora d...
PNF31413      106 RHIreKKDTYKELLQDFINASEWDLIIEECDPDYVPeeakGEILGLRNIHVFGLANIVKRPIILLDSAAGMNCsGDYSAV 185  Cryptotermes ...
EEC04585      229 RHLeeHLAKYKELLKDFVDEKEWASIIAECDPEFLPp--eGELLGLRNIHVFSLANVLRRPIILLDSLAGMQSlGDYAAL 306  black-legged ...
XP_002126512  209 NHLkrKLEQYKIMFKEFHDDTEWDGIIEEADPYCTAg---GVAAGLGNIHIFALSNILKRPIMLLDSMKNLQNaGDYTGL 285  vase tunicate
RZF48111      222 QHFstHLEQYQALLGDFINRSEWPCIIQECDPDYHPl--dDEILGLRNVHIFGLANLLRRPILLLDNPSGMNTsADYSAL 299  small brown p...
Feature 1                                         # #     
Q96JH7        322 FLPGLIPAEKCtgk-dgHLNKPICIAWSSSGrNHYIPLVG 360  human
XP_019851333  314 FLPSFYKREEClspgstLLNSPITIAWSNSGyNHFVPLVP 353  Amphimedon queenslandica
ELT92345      287 FLPGFQAPEKCrdk-ngALNKPLCLAWSNSGhNHYIALVG 325  Capitella teleta
XP_013065753  282 FLPCFSSPSECmnk-dgVLNTPICIAWSSPGrNHFIPLVG 320  Biomphalaria glabrata
XP_002108607  279 FLPVLSTVIECkgk-dgRLHKPLVLAWSNPArNHFIPLVG 317  Trichoplax adhaerens
RMX50409      286 FLPALIPEDLCrsk-dnLLNKPLAVAWSSPGrNHFIPLVG 324  Pocillopora damicornis
PNF31413      186 FLPALVNPEECkgk-tkELNLPLCLAWSSSArNHFIPLVG 224  Cryptotermes secundus
EEC04585      307 FLPSLVAPERCrggplnRRNPPLCLSWSSSGrNHYIPLVG 346  black-legged tick
XP_002126512  286 FVPVMVEPEDC------LSKSPICIAWSGRGhNHFVALVA 319  vase tunicate
RZF48111      300 FLPGLSSPESCrk--kgVSNPPICVAWSSAArNHFIPLVP 337  small brown planthopper

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