6K9N


Conserved Protein Domain Family
AtOTU1-like

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cd22765: AtOTU1-like 
Click on image for an interactive view with Cn3D
Arabidopsis thaliana Deubiquitinating enzyme OTU1 and similar plant proteins
This group contains plant otibain-like proteins including Oryza sativa Japonica group otubain-like deubiquitinase and Arabidopsis thaliana deubiquitinating enzyme OTU1 (AtOTU1), also called OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 1 or OTU domain-containing protein 1. It is a deubiquitylase (DUB)/ubiquitin thioesterase (EC 3.4.19.12) that mediates the deubiquitination of protein substrates and may therefore play an important regulatory role at the level of protein turnover by preventing degradation. AtOTU1 shows a preference for Met-1 and 'Lys-48' over 'Lys-63'-linked ubiquitin tetramers as substrates. It belongs to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad. It is classified as a family C65 cysteine protease by MEROPS.
Statistics
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PSSM-Id: 438602
Aligned: 11 rows
Threshold Bit Score: 384.786
Created: 21-Sep-2020
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:homodimer interface [polypeptide binding site]
Evidence:
  • Structure:6K9N: Oryza sativa ubiquitin thioesterase forms a homodimer; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #           #### ##                    ### #   #                               
6K9N_A         5 PYVGDKEPLSTLAAEFQsGSPILQEKIKLLGeQYDALRRTRGDGNCFYRSFMFSYLEHILetq-dkaEVERILKKIEQCK 83  Oryza sativa Ja...
Q8LG98        47 PYVGDKEPLSSLAAEYQsGSPILLEKIKILDsQYIGIRRTRGDGNCFFRSFMFSYLEHILesq-draEVDRIKVNVEKCR 125 thale cress
XP_002963157  32 EFVGDKEPLSVLAAEYElGNPVFKAKIEQLGkTYGAIRRTRGDGNCFFRSFMFAYLEHVLeae-derEAARVLQNVEQCR 110 Selaginella moe...
XP_024379309  42 EFVGDKEPLSVLEEEYKaGSRVFLAKLQILKqKYGAIRRARGDGNCFFRSFMFSYLEHLLvtq-dvaEVARMEKAIEICK 120 Physcomitrella ...
PNW77550      42 EYVGQEENLGALKAEYEnGNQNFVQKIGKLEeRYRTFRRTRGDGNCFFRGFIYAYLEGLLqns-dlaEANRFMSVVQSWK 120 Chlamydomonas r...
PSC75800     316 PLMGDREPLAALAAEYAdGSQIYRQKIEKLGeTYGSIRRTRGDGNCFYRSFLFGYLEHLLlspdgggERDRAITRLEALK 395 Micractinium co...
ABK21173      40 PFVGDKESLSALAAEYKtGSSILKAKIEVLDeLYVAIRRTRGDGNCFFRSFMFSYLEHILetq-deaEVEHVLKNIEQCK 118 Sitka spruce
KAA6427949   114 PFVGDLEPILALQQEYQsGSAVFVAKIKKLEtMYKSIRRARGDGNCFFRSFVFAYMESLVhta-dltERNRVVTCIRQWK 192 Trebouxia sp. A1-2
GBF98743      74 PYVGDKETLESLMQDYR-AYPVFVAKIRSLAsRYGGIRRVRSDGNCFFRATAFGLLEWLLvne-adsECQNFLRTLEACK 151 Raphidocelis su...
KDD76605      53 PVVGAREPLSSLAGEYA-FSSSVHAKVASLSaEYADFRRIRGDGNCFYRAVFYGLAEQVAhat-dgvASRAVRDRLQNVR 130 Helicosporidium...
GAX72818      44 PYVGDKEDMSCLKTEYQnGNFVFLKKIDSLQaTYSSYRRTRGDGNCFYRAFLYRYLESLLden-nipECRRFIECINGWR 122 Chlamydomonas e...
Feature 1                                                         #   #                          
6K9N_A        84 KTLADLGyieFTFEDFFSIFIDQLESVLqghe---ssigAEELLERTRDQMVSDyVVMFFRFVTSGEIQRRAEFFEPFIS 160 Oryza sativa Ja...
Q8LG98       126 KTLQNLGytdFTFEDFFALFLEQLDDILqgte---esisYDELVNRSRDQSVSDyIVMFFRFVTAGDIRTRADFFEPFIT 202 thale cress
XP_002963157 111 NALVSLGyaeFTFEDFLAIFVEQVENALpgkp---tsmsIGTLVERCRDQYISNyVIMFFRFVTSSEIRRRAEFFEPFIL 187 Selaginella moe...
XP_024379309 121 KTLIDHGfaeFTFEDFLAIFVEQLQSVIqdke---vsvsLETLVERCRDQYISNsVVMFFRFVTSGEIGRRTEFFEPFIQ 197 Physcomitrella ...
PNW77550     121 AKLVEGGfqeLVFEDAMELLLEQVKEVTkasd----qfaQEKLLVNMRDDMVSNmIVMFLRLVTSCEVQRREDFFFPFIL 196 Chlamydomonas r...
PSC75800     396 KELTEVGgydEIVLETPVDMVLQLLRGVgsqv---epltIEGLEATVRDEEIGPyALWLLRMITSCEVKRRADFFAPFVM 472 Micractinium co...
ABK21173     119 KALLDLGyaeFTFEDFFSIFIELLESVIpgrd---ssisIDTLIERSRDPLVSNyVVMFFRFVTSGEIRRRTDFFGPFIM 195 Sitka spruce
KAA6427949   193 QKMVDHGyqeLVFEDAMEVIIDQLNALGtpd-----pltVQSLEGNMRDGMISNmVIMFLRMLTSCEIQRRQDFFAPFIM 267 Trebouxia sp. A1-2
GBF98743     152 DRMVGAGfdpLVFEDALDMLAGMVNAICvgasvpgqgadASTLLANFRDDTVSNmVVMLLRFITSAEIQARQDHFAPFVL 231 Raphidocelis su...
KDD76605     131 KELLSFGyddLVVEGPIESLVDLFEMIGeavp----svaIERLNECMQDVYFSNhAIFLMRMITSAEIKRRSDFFEPFVM 206 Helicosporidium...
GAX72818     123 QKLVEAHfqeLVFEDAMELLLEQVSTIGnndn----pmtKETLTINMRDDMVSNmMVMFLRMVTSAEIQRRSDFFAPFIM 198 Chlamydomonas e...
Feature 1                            ###                        #                                
6K9N_A       161 Gl---tNSTVVQFCKASVEPMGEESDHVHIIALSDALGVPIRVMYLDRSscd-------agnISVNHHDFSPEAnssdga 230 Oryza sativa Ja...
Q8LG98       203 Gl---sNATVDQFCKSSVEPMGEESDHIHITALSDALGVAIRVVYLDRSscd-------sggVTVNHHDFVPVGitnekd 272 thale cress
XP_002963157 188 Gi---sSTTVDQFCKSSVEPMGEESDHVHIIALTDALGVPVRVVYLDRSicdn------gktTDVNHHDFIPGGadaee- 257 Selaginella moe...
XP_024379309 198 Gm---sNMSVVQFRRSSVEPMGEESDHVHITALSDALGVPVRVVYLDQSgdvn------dkpVIVNNHDFIPEGmda--- 265 Physcomitrella ...
PNW77550     197 GmydepPATVELFCQRHVEPMGEESDHLHIVAVTEALQIPVRVVYLDSSglpaggggggagaLEASCHDFVPDScpp--- 273 Chlamydomonas r...
PSC75800     473 Gl---tDLDVSTFCSKCVDPMGEEADHVQLVALTDALQVPIRVVYLDRSlapgggggggggdVQVDKHDFVPEGcpp--- 546 Micractinium co...
ABK21173     196 Gv---sNGTVDQFCKTSVEPMGEESDHVHITALSDALGVPIRVVYLDRSscd-------vgkTEVNHHDFIPSNcllkea 265 Sitka spruce
KAA6427949   268 Gml-ddPVTVEQFCRRYVEPMGEESDHIHLVAITDALQIPIRVVYLDRSmaalag-aasedaAAVNHHDFVPEAmqkaa- 344 Trebouxia sp. A1-2
GBF98743     232 Gv---aDTDVQTFCRRFVEPMAEESDHVHAQALCDALRVPITVVYLDSHersgvg-ggaggsTECEVHRFEPSDegagsi 307 Raphidocelis su...
KDD76605     207 Gl---aEMDVETFCRRCVDPMEEEADQVQIIALTETLQVPLRVVYLSPSpfaea---ggaggSDVDAHPFQPDRhle--- 277 Helicosporidium...
GAX72818     199 Gmy-ddVSCVEVFCQRSVEVMGEESDHVHIVALSDALQVPIAVVYLDRSnvnrvn--egsseVEVETYHFNPEPgas--- 272 Chlamydomonas e...
Feature 1                                          
6K9N_A       231 -------------aaaekPYITLLYRPGHYDILY 251 Oryza sativa Japonica Group
Q8LG98       273 -------------eeasaPFITLLYRPGHYDILY 293 thale cress
XP_002963157 258 -------------qrrenPHVVLLYRPGHYDILY 278 Selaginella moellendorffii
XP_024379309 266 ---------------avePNVILLYRPGHYDILY 284 Physcomitrella patens
PNW77550     274 ---------------gtaPRVHLLYRPGHYDILY 292 Chlamydomonas reinhardtii
PSC75800     547 ---------------pgsPRVHLLYRPGHYDLLY 565 Micractinium conductrix
ABK21173     266 ------------gsetiePSVVLLYRPGHYDILY 287 Sitka spruce
KAA6427949   345 -------------ainvqPRVHLLYRPGHYDILY 365 Trebouxia sp. A1-2
GBF98743     308 aaaaagdggggagtgrgrPSVHLLYRPGHYDISY 341 Raphidocelis subcapitata
KDD76605     278 ----------------gvSTVHLLYRPGHYDLLY 295 Helicosporidium sp. ATCC 50920
GAX72818     273 ---------------vlrSCVSLLYRPGHYDILY 291 Chlamydomonas eustigma

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