Conserved Protein Domain Family
OTU_CeDUB-like

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cd22755: OTU_CeDUB-like 
OTU (ovarian tumor) domain of Caenorhabditis elegans deubiquitylating enzyme with USP/UBP and OTU domains, and similar proteins
This subfamily is composed of mostly uncharacterized proteins containing an OTU domain, similar to Caenorhabditis elegans deubiquitylating enzyme with USP/UBP and OTU domains. OTU domain-containing proteins function as deubiquitinases (DUBs)/ubiquitin thiolesterases (EC 3.4.19.12) that catalyze the thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin, a small regulatory protein that can be conjugated to a large range of target proteins. Protein ubiquitination is a post-translational modification of mostly Lys residues that regulates many cellular processes, including protein degradation, intracellular trafficking, cell signaling, autophagy, transcription, translation, and the DNA damage response. These DUBs may play important regulatory roles at the level of protein turnover by preventing degradation. They belong to the OTU family of cysteine proteases that use a conserved cysteine, histidine, and an aspartate, as the catalytic triad.
Statistics
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PSSM-Id: 438592
Aligned: 86 rows
Threshold Bit Score: 100.413
Created: 6-Oct-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
putativeactive site
Feature 1:putative polypeptide substrate binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #                                                #  #        ####    
NP_001293464  507 GRVKGIEsDGNCFYRAISWCLTgs-qkYHKALRIATANYLrndiai--vdkychKTDHKTYVQQVeg--dGWWATNVEIC 581  Caenorhabditi...
CDJ85890     1816 PLSCEVRgDGNCLFRTLCWWLTggnekDHFKLREKLVAFMsqyrskf-asllpsQQDMETHLQKMse--dGEWGTQVELA 1892 barber pole worm
EJW87726      593 SKIAPVVaDGNCLFRSIALYLSgs-deEHLIVRENVVKFEekyddllrevnhfsLVKWEEHIKKMtn--dGEWATEIEIL 669  Wuchereria ba...
XP_009018402  112 KHCEQVAgDGNCLFRSFSFWITgs-edAHLAVRELIIRELasnprt--ylsqtsHTSFESYIRETgmhqeGVWGSEIEIF 188  Helobdella ro...
VDD88258      493 AYTYSVIaDGNCLFRALSFYVTggnerFHTAVRARIATFQkkygdkfrllygmsLSEWNNYVEDIst--eGVWGSDKELH 570  human pinworm
VDK84503      898 EFLVALPgKGNRLFQALAHYISgd-dnDFPHLRQAIIQFElehsvqfmnlkqwdDKAWNSHLNSLfl--nCEDGSDVEIL 974  Litomosoides ...
KHN73648      951 KRVATVAgDGNCLFRAVAYAITggseeGHAIIKEAVLSFElrhescfrelanlsEEEWRDRMEQLme--dGSWGGTYEII 1028 dog roundworm
VDM41164      763 IRVASIAgDGNCLFRAVAYAITggsdeGHANVRQAIVSFElehedrfrtltnfdEEGWREHLNKLmn--dGNWGGDCEIF 840  dog roundworm
VDK55931      571 ARCGTVAgDGNCLFRALAFAITggsdrQHAAIRQCITSFElgnedrfrvlvekdAKTWEDHVDALis--dGSWGGSSELT 648  herring worm
VBB34312      102 DFLVAVPgNDNRLYQALAHYITgd-snDFHQIRQAIIQFEvehpaefmnlkqwdKIAWHSHLNTLfs--nTENGSDVELF 178  Acanthocheilo...
Feature 1                                # #                                     #                
NP_001293464  582 VMANLLNVNIYTFLSd----GWICTSPqnss----------------------tsrsGSFYLENKd-------------- 621  Caenorhabditi...
CDJ85890     1893 AAACWLGVNIYTFLEg----KWLKYRPlfrwsmdgsppi-------tlhrdectddrGAIFICNAs-------------- 1947 barber pole worm
EJW87726      670 ALAALLDVEIWTFFNs----RWLRYRPlytvgkdgkshk-------lpiqkydnsrkNAIFLINEn-------------- 724  Wuchereria ba...
XP_009018402  189 VAATLLNTPIAVFAAfgdrqLWQVFRPyakvtghnnngvtsrnrnssltssgtneptTMLYLHNSs-------------- 254  Helobdella ro...
VDD88258      571 AVATMLDADVWTFYRg----RWLVYRPsylflrlyslld-------gavksgtdavrDSIYLVNDr-------------- 625  human pinworm
VDK84503      975 AFAAMFQVDVWIFLQd----HWFCYRPkfllvdg----------------qyrklsiQQYHIGKNeg------------- 1021 Litomosoides ...
KHN73648     1029 ALATMLRIEIWTFLDg----RWLCHRPwfrpspdgtiqe-------ipyheyqfgvrRAIYLTNEn-------------- 1083 dog roundworm
VDM41164      841 ACATMLQTEIWTFLNg----SWLCYRPrfkssregmfe--------dyfslpenwpeSGRVLQNArlvaerayedrlrai 908  dog roundworm
VDK55931      649 AIATMLRIEVWTFLDg----RWVCYAPrfqkgaerdeiv------dipineyqlgsrPAIYLLNEh-------------- 704  herring worm
VBB34312      179 ALASKFKVDIWIFHKq----QWFCYRPkflvvngqckn--------lsiqqyhigenEGIYLHYEn-------------- 232  Acanthocheilo...
Feature 1                                     ###    
NP_001293464  622 ----------------------------CHYEPVL 628  Caenorhabditis elegans
CDJ85890     1948 ---------------------------gCHFQPAV 1955 barber pole worm
EJW87726      725 ----------------------------FHYKPVL 731  Wuchereria bancrofti
XP_009018402  255 ----------------------------NHFEPVL 261  Helobdella robusta
VDD88258      626 ----------------------------EHYDPVI 632  human pinworm
VDK84503     1022 --------------------------vyLHYENSC 1030 Litomosoides sigmodontis
KHN73648     1084 ----------------------------YHYNPVI 1090 dog roundworm
VDM41164      909 vastdigelepsyrlisvishlglestsGHYICDI 943  dog roundworm
VDK55931      705 ----------------------------CHYSPVI 711  herring worm
VBB34312      233 ----------------------------GVFFPVF 239  Acanthocheilonema viteae

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