1KIL,3RK3,1L4A,5W5C


Conserved Protein Domain Family
Complexin_NTD

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cd22740: Complexin_NTD 
Click on image for an interactive view with Cn3D
N-terminal SNARE complex binding domain of the complexin family of SNARE regulators
Complexins (CPXs) are small, cytosolic proteins that bind to the soluble N-ethylmaleimide-sensitive factor attachment protein receptor (SNARE) complex to regulate synaptic vesicle exocytosis. There are four CPX isoforms: complexin I/synaphin-2, complexin II/synaphin-1, complexin III and complexin IV. CPXs I and II are highly homologous hydrophilic proteins that are enriched in neurons where they colocalize with syntaxin and SNAP25. They regulate the sequential interactions of alpha-SNAP and synaptotagmins with the SNAP receptor during exocytosis. CPXs III and IV are the only CPX isoforms present in retinal ribbon synapses. In addition, CPXs III and IV carry an extension with a functional CAAX-box farnesylation site that is absent in CPXs I and II. Their C-terminal farnesylation regulates their synaptic targeting and modulatory function in transmitter release. They may contribute to the unique release efficacy of retinal sensory neurons. CPXs III and IV can functionally replace CPXs I and II. Most of the invertebrate CPXs are more similar to CPXs I and II than to CPXs III and IV. This model corresponds to the N-terminal region of CPX that is responsible for SNARE complex binding.
Statistics
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PSSM-Id: 439281
Aligned: 56 rows
Threshold Bit Score: 42.1617
Created: 5-May-2019
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
SNARE binding
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:SNARE binding site [polypeptide binding site]
Evidence:
  • Structure:1KIL; Rattus norvegicus complexin 1 in complex with SNARE, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #      #      #   #   #  #  ##  #  ####
1KIL_E         9 KKEEERQEALRQAEEERKAKYAKMEAEREVMRQGIRDKYGI 49  Norway rat
GCF45962      86 GQQRPQWVTSPKQKNKRDATFTQRKAERAAMRAHLREKYQL 126 Paroedura picta
NP_001081171  49 SSEEQHERRLQADMETRDSLYAQRKAERAMMREQMRSKYHL 89  African clawed frog
XP_026545200  33 SWEPVKLQSHPRQKAERDAAFARQKTQRASLRAHLREKYNL 73  mainland tiger snake
XP_016853038  34 LSRNRTSQGSQKQQTKRESAFAQRKAERASMRAHLREKYQL 74  green anole
XP_028564793  42 QPPALKKPISEKHKSKRDAAFAQQKAERATMRAHLRQKYQL 82  Common wall lizard
TFJ97918      38 KGPAEQNQRTQGKKSKRDVVYAQRKAERAAIRTHIREKYQL 78  big-headed turtle
XP_020653080  42 FLPPPSRQLSQKQKDKRDAGLARRKAERASMRAQLREKYQL 82  central bearded dragon
XP_028649204  44 EELQRYQKSIELENKKRAAFHQQRNAERAVMRTHFRQKYQL 84  reedfish
KPP79239      68 KERQVDELFFRCRLKLREARNAQKNAERAAMRAHYRSKYRL 108 Asian bonytongue

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