6GY6,6GY8,6EK7,6EL1


Conserved Protein Domain Family
ClyA_XaxA-like

?
cd22657: ClyA_XaxA-like 
Click on image for an interactive view with Cn3D
Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, and similar proteins
This model includes Xenorhabdus nematophila alpha-xenorhabdolysin (XaxA) and Yersinia enterocolitica YaxA, both parts of two-component alpha-helical pore-forming toxins (alpha-PFTs). The xaxAB genes encoding the XaxAB toxin have also been also identified in various plant and human pathogens. XaxAB triggers necrosis and apoptosis in both insect hemocytes and mammalian cells. Structure studies show that component A binds to component B's back, forming a subunit; twelve to fifteen of these subunits then conjoin as the pore-forming toxin. Component A stabilizes each subunit on the membrane and activates component B, which then punctures the membrane by swinging out its lower end. Similarly, Yersinia enterocolitica YaxA, encoded by the yaxAB gene, forms a pore predominantly composed of decamers of YaxA-YaxB heterodimers. Although both subunits bear membrane-active moieties, only YaxA is capable of binding to membranes by itself and YaxB is subsequently recruited to membrane-associated YaxA and induced to present its lytic transmembrane helices; pore formation then progresses by further oligomerization of YaxA-YaxB dimers. YaxAB has been found to be strongly upregulated by the Yersinia master regulator RovA, a transcriptional activator of Yersinia outer membrane protein invasion which is involved in bacterial attachment and invasion across the intestinal epithelium.
Statistics
?
PSSM-Id: 439155
Aligned: 146 rows
Threshold Bit Score: 193.959
Created: 1-Oct-2020
Updated: 13-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 31 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:this is a two-component alpha-helical pore-forming toxin YaxAB, which forms a pore composed of decamers of YaxA-YaxB heterodimers
  • Structure:6EL1: Yersinia enterocolitica YaxA interacts with neighboring molecules that include YaxB, involved in forming an eicosameric structure to form a pore; contacts at 4.0A

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          #  ##  #                                                                      
6GY6_A        44 TKGDLINIKLYVKHSLELPFTlegvkeyigyndididglkpAKMATLFKEIHDHALSWSGVESKVQQQSIDLENAGKQIT 123 Xenorhabdus nem...
6EL1_A        46 TKEDLINLKLYVRKGLSLPTRqdeveaylgykkidvaglepKDIKLLFDEIHNHALNWNDVEQAVLQQSLDLDIAAKNII 125 Yersinia entero...
PSS57079      15 THEHIVTLNQYANHVFSLPITqeavtrwlgystiaervlmpSSMVEMHKQLQTHGRSWTKLANNSKKLGFELAASANGIN 94  Pseudomonas sp....
KIU51007      30 SREHIVTLNQYVKYVTGLPTEtaslvpwlgytdikepvlsvSAMRTTFLNLHKHARAWGTLSDECKKLSAELGVCARGIN 109 Pseudomonas putida
AGZ33850      35 TAESRSTIRNYSERMRVLPSTlaqtiawlgydritepelapERMLGLFKHLALHARTWSILDTQCLAVTTALAEHARQVE 114 Pseudomonas sp....
WP_136474837  40 TREHIITLNQYANHVFSLPGTtdaviewlgystiseaelmpSSMCDLHKQLQQHGRSWVELADISKALGFQLASSASSID 119 Pseudomonas sp....
SYX88881      40 TVESRQTINDYSLRMLDLPADhlqttrwlgythitepeltpDRMLALFKRLRAHGQAWSQLDRTARAVTLQLDAHAGQVE 119 Pseudomonas rei...
WP_133215538  40 TREHIVTLSEYANYTFTLPTThdtvvrwlgystiasqdlmpGQMLGLNKDLRAHGSKWKDLADNSKRLGFELAANANGIN 119 Pseudomonas sp. H9
WP_119138728  40 SREHIITLNRYVNFVFGLPSTpdnlqrwlgytqidepeltpAGMTTLFNALRGHARSWGPLSDSNKKLASELASTAASIN 119 Pseudomonas rei...
WP_153788750  40 SREHIITINRYVNFVFALPATsdnlqrwlgytdidepelkpAAWSTLFADLRSHARSWAPLSDNSKRLASQLAATANSIS 119 Pseudomonas sp....
Feature 1                                                                                        
6GY6_A       124 LTGDEIISVIdqmpiiervknklgdltdkqlaeitytnddkeiaVELGNILESMKKDIKRQQENTQKVKTAVSDFKlkli 203 Xenorhabdus nem...
6EL1_A       126 STGNEIINLInqmpitlrvktllgditdkqlenityesadhevaSALKDILDDMKGDINRHQTTTENVRKKVSDYRitlt 205 Yersinia entero...
PSS57079      95 STGDEVLVILekssalgkrreawdtl--hfgapvslgaddkrrvVDLIDYMELLREDVDIFARRVCVVREETEAFRdaar 172 Pseudomonas sp....
KIU51007     110 TTGEGVMQECektkalggrrdtwesv--qfaapvalsfgdreivSSLVDYMEVLKDEVEHFHARVSSVRSHTETFRdtar 187 Pseudomonas putida
AGZ33850     115 ALGAQVLDLAartramgidraswatl--lsapemdlgprdlqllRSMADQLMWLHGQIDDFDQQVDGVRLGLENFRdqvr 192 Pseudomonas sp....
WP_136474837 120 STGQYILKTLektvaigksrdrwesi--sfdepveltlidkgtvKDLVGFMDVLRKDVAQFAENVTVVGGQTKEFRdvar 197 Pseudomonas sp....
SYX88881     120 ACGAQVVQLVartralgahrpswdsl--rdapdvpldehdrrlvGSMAGQLIQLHGLIDDFDLQLDGVRMGFERFRdear 197 Pseudomonas rei...
WP_133215538 120 TTGSEIIEILektkalgkkneaweti--tfdhpvvlnatdkgsvLDLVDYMTVLREDVDRFAKRVNEVGEETEKFRseat 197 Pseudomonas sp. H9
WP_119138728 120 AAGETIVDECrqiralgsdikawdkv--vlsapvkldradqravSSLVDYMQILKEDVQSYGLRVATVRGETEAFRdtar 197 Pseudomonas rei...
WP_153788750 120 SAGEAIIELTagvlkldresqwqela---lrdplplgvsdrgsvSTLLEYMQFLNEDVRDYAVRVAAVKEQTESFRdiar 196 Pseudomonas sp....
Feature 1                  #      #  ##  #                      ##   #  #  #                     
6GY6_A       204 ggelsdgtiAQGLQPQISSKKKLMDDnnlsttik---dlqskideKNKEIDQFQKDYNKyvglafsgmvggiiswaitgg 280 Xenorhabdus nem...
6EL1_A       206 ggelssgdkVNGLEPQVKTKYDLMEKsnmrksikeldekikekrqRIEQLKKDYDKFVGlsftgaiggiiama-----it 280 Yersinia entero...
PSS57079     173 ekllplvatKTEAIKRQKVSGAVEQLred-------------lleLDKEIKRLEAEYDQyfnaalnglsagllglvitgt 239 Pseudomonas sp....
KIU51007     188 felmnevalKTDAIERHQASGATQALrde-------------laaLDKEIDNLNKQYDEyvkaalsglaagplgavisgs 254 Pseudomonas putida
AGZ33850     193 ftlrpavfeKCRAAKRFSLAPDAEDLewe-------------lsrLDGEILDVRHDYRSfskqstlgwlggpfgaiisns 259 Pseudomonas sp....
WP_136474837 198 evlaplvirKLHALKRRQSSGKIEQLred-------------lvsLDNEIKRLGSEYDHyvkaalaglaagplgavitgs 264 Pseudomonas sp....
SYX88881     198 fklrpevleKCRAAERFAQAPDGENLawe-------------lasLDEDIRAVRGDYERysrqssigwaggpfgalvsss 264 Pseudomonas rei...
WP_133215538 198 tvlipavlsKSRAIKDLNTGEQIKEMred-------------laeIDKRIKQLEAEYDQyvkaalsglaagplgavitgs 264 Pseudomonas sp. H9
WP_119138728 198 fklipavkqKGLAVERKKGDGAVERLreq-------------lkeLDDEIAALSKEYDQylkqalsglaagaigviitgg 264 Pseudomonas rei...
WP_153788750 197 fklipavktKGQSVERKQNDGEVERLrgl-------------laqLDADIEALSKEYDQyvkmalsglaagpigalitgg 263 Pseudomonas sp....
Feature 1                                            #  #   #  ##  ##  #     #   #      ##  #    
6GY6_A       281 ifgdkaekarkqKNKLIDEVKDLQsqvk--dksaLQTSVQNLSLSFAGIHTSMVDAEEALNHLDFMWNTMLTQITTSRDk 358 Xenorhabdus nem...
6EL1_A       281 ggifgakaenarKEKNALISEVAEleskvssqraLQTALEALSLSFSDIGIRMVDAESALNHLDFMWLSVLNQITESQIq 360 Yersinia entero...
PSS57079     240 iygtkaekvrkeRNKCQEQRGEVSrkik--aavrLEGLVEELGTQMGQMETRLRDVVTASSHLQSTWQLIGVYIDASIEh 317 Pseudomonas sp....
KIU51007     255 iygskaekvrktRNRVQKERKAVGarlt--aavnLEGRLQVLTTHMDELATRLQEVVTASSHLQTAWQTIGTYIEASIEk 332 Pseudomonas putida
AGZ33850     260 iygakarkaraqLHELELRHRQLSqrla--eiqrVSGRVNELNACMGELEIDLWDVVLASGHLHTTWQTIEAYLESSVVr 337 Pseudomonas sp....
WP_136474837 265 iygskaekvrkeRNARQAERAETSqklk--aairLEGLLEELNTQMGQLETRLRDVLTASSHLHSAWDMIGKYIDASITh 342 Pseudomonas sp....
SYX88881     265 iygpkakaaraeLQRLEQRRSEVSrrls--efrrVEGRVQEVNSNMGQLEFDLWDVVLAAGHLHTAWQTIEAYLESAAGh 342 Pseudomonas rei...
WP_133215538 265 iygskaekvrkeRNKLQKERGALSqklk--aavkLEGLVEELGTQMGQTETRLRDVVTAASHLHSAWLKIGTYIDASIEq 342 Pseudomonas sp. H9
WP_119138728 265 iygskaekvrkeRKGRQAERRAVSeqlr--vrvnLEGRMEEMTTFVDELDTRLQDVVTAASHLQTAWEIVGSYIDSSITr 342 Pseudomonas rei...
WP_153788750 264 iygskaekvrkeRQTRQAERRSFSeqlt--lrvnLEGRMETLSTAISELDTRLQDVVTSASHLQTAWGIVGAYIDTSISr 341 Pseudomonas sp....
Feature 1                   #  #  ##                
6GY6_A       359 fddindalkltSFVIAFKQVIEPWRDVQGSAAQLI 393 Xenorhabdus nematophila ATCC 19061
6EL1_A       361 faminnalrltSFVNKFQQVITPWQSVGDSARQLV 395 Yersinia enterocolitica
PSS57079     318 leriesnqalfKFATHFKRFIEQWKDIEMFAQHMN 352 Pseudomonas sp. BBP2017
KIU51007     333 lekmndsrqlgIFIIHLRNFLSQWAFIEACSITMS 367 Pseudomonas putida
AGZ33850     338 lgrmntrqelvVFILHFRQFLAQWSGIGRHAGQMR 372 Pseudomonas sp. VLB120
WP_136474837 343 lnrvesnqqlyKFALFFGNFVDQWKGIGSFARHMN 377 Pseudomonas sp. DG56-2
SYX88881     343 lgkmntrqqlaVFIYYFRQFLAQWAGIREHGLEMA 377 Pseudomonas reidholzensis
WP_133215538 343 lkriennqqlyKFAIFFKRFIGQWKEIEKFAQHMN 377 Pseudomonas sp. H9
WP_119138728 343 lekiddnrelaRFVLYFRQFLAQWKQIEKTSLQLT 377 Pseudomonas reidholzensis
WP_153788750 342 leriddtqrlaIFGLHFKQFFKQWAAIEKTSLHLT 376 Pseudomonas sp. EMN2

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap