1QOY,6MRT,6MRU,6MRW,2WCD,4PHQ,4PHO


Conserved Protein Domain Family
HlyE-like

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cd22651: HlyE-like 
Click on image for an interactive view with Cn3D
alpha pore-forming toxin (alpha-PFT) hemolysin E (HlyE, ClyA or SheA) in Escherichia coli, Salmonella typhi, and Shigella flexneri, and similar proteins
This family of alpha pore-forming toxins (alpha-PFTs) includes hemolysin E (HlyE; also called cytolysin (ClyA) or silent hemolysin A (SheA)), produced by certain strains of Escherichia coli, as well as by Salmonella enterica and Shigella flexneri, among others. HlyE is responsible for the hemolytic activity of certain strains of E. coli, including the pathogenic strain E. coli O157. Distinct from many secreted toxins and effectors, HlyE is delivered by outer-membrane vesicles (OMVs). HlyE is unrelated to the well-characterized pore-forming E. coli hemolysins of the RTX (repeats in toxin) family, hemolysin A (HlyA), and the enterohemolysin encoded by the plasmid borne ehxA gene of E. coli 0157. However, they all have the common structural features of an elongated, entirely alpha-helical domain, except for a short hydrophobic beta-hairpin known as the beta-tongue. The HlyE is monomeric in the periplasm where it forms a disulfide bond to prevent oligomerization. In the OMVs, it oligomerizes via a sequential mechanism to form a circular dodecameric pore structure that is active. The pore structure concentrates the amphipathic helices in the center of the ring-like structure, forming a helical barrel that inserts into the membrane by a wedge-like mechanism. HlyE/ClyA represents a prototype of the structural ClyA family of alpha-PFT which includes toxins that share structural similarity with HlyE, and includes Bacillus cereus HblB, Aeromonas hydrophila AhlB, and Bacillus thuringiensis Cry6Aa. Expression of HlyE in the absence of the RTX toxins is sufficient to give a hemolytic phenotype in E. coli. HlyE is expressed during anaerobic growth of E. coli. Anaerobic expression is controlled by the transcription factor, FNR (regulator of fumarate and nitrate reduction), such that, upon ingestion and entry into the anaerobic mammalian intestine, HlyE is produced and may then contribute to the colonization of the host.
Statistics
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PSSM-Id: 439354
Aligned: 38 rows
Threshold Bit Score: 195.977
Created: 1-Oct-2020
Updated: 13-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 76 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:2WCD: Escherichia coli HlyE (cytolysin A) interacts with neighboring molecules in a dodecameric transmembrane pore; contacts at 4.0A
  • Comment:Pore-formation follows a pattern involving membrane binding, oligomerization and finally insertion of the transmembrane regions to form the pore.
  • Comment:recent high-resolution cryo-EM structures of Escherichia coli HlyE show that it can form pores of different sizes, including a dodecamer, tridecamer, and tetradecamer

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #    ###  ######## #   #   #      #          #  ##  ##  ##  #  ##  #   #   #  ##
1QOY_A        29 KNAIETADGALDLYNKYLDQvipWQTFDETIKELSRFKQeysqaASVLVGDIKTLLMDSQDKYFEATQtvYEWCGVATQL 108 Escherichia col...
2WCD_A        20 KNAIETADGALDLYNKYLDQvipWQTFDETIKELSRFKQeysqaASVLVGDIKTLLMDSQDKYFEATQtvYEWCGVATQL 99  Escherichia col...
XP_003424984  31 EKALRSLSNVVVKYKSEFDTkvkFVELQKAIDAIDDSMLdyvgtAKDKLDELRALNSAARQTYQDCVGpvFEWCVSINST 110 jewel wasp
OXU31814      33 ERALKSISNVVVKYKSEFDRrvkFHQLQEAIDAIDEAMLdyqgvAKNKLDQLRTLNSNARNTYQDCVGpvFEWCVSINST 112 Trichomalopsis ...
XP_017851438  30 TTLLNSMSNVVYKYHSEFDTkvkFAKLQEVLTSIDKSMLdyqgtAKKKLDSVRDKNSEARLKYEDCVGpvFQWCVSLNSI 109 Drosophila busckii
XP_017086937  34 KKGIKSLSNVLVKYQADFDRkvkFVELQEAIDEIDTAMLeyngkAKDTLPQISSLNSEARLSYENCVGpvFEWCISVNST 113 Drosophila bipe...
XP_017104232  24 KKGIESLSKIMVRYRIEFDNranFMKLQLAVDEIDHAMMgyqgnAKYRLPMMRFLNSNARILYHSCVApvFEWCISANRT 103 Drosophila bipe...
XP_017089755  33 EKGLQSLTNVMVVYQAEFDNkvkFVELQKAIDLIDESMRgyqgtAKNRLDKVRELNSAARIEYHRCVApvFEWCIAINST 112 Drosophila bipe...
XP_016982868  35 EDILKNLTQSVYAFHQSMDDyidWVSFDNIFEEMIKHSGe---lAVSNMGSIRSYFLKSRDFYFDAVAsvYEWCATIDIM 111 Drosophila rhop...
XP_001966203  13 EKKLALLSRVVVKYNKELDTrvnFPALQKAIDAIDEAMLgyqgdAKKELDKVRALNTTARRTYEKCVGliFEWAVSASNT 92  Drosophila anan...
Feature 1          #   #            ##  #  ##  #   #    #   #  ##  ## ##  ##  ##  ## #   #   #  #
1QOY_A       109 LAAYILLFDeyne--kkaSAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSekSSYFQSQVD 186 Escherichia col...
2WCD_A       100 LAAYILLFDeyne--kkaSAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSekSSYFQSQVD 177 Escherichia col...
XP_003424984 111 LDLFIPYISdpslspydkDIIWEMTVDALSDGQKKTYNSLELLKSVQKKTIDLKNLLDAVLHDLHNDFGpnGFYGKRKQE 190 jewel wasp
OXU31814     113 FGIFISFISdarltehdrDIIWNMTINALRDGEKKTSNSLELLVLVQNKTAAVKNLLDSMLHDIHDDFGpqGYYGMQKAA 192 Trichomalopsis ...
XP_017851438 110 FEIVIGRLNadln-nedrDAIWNITVKTLSDGQRVTYDSLEILKEVQMKTAYLKNSLESMLHDLHDDFGpnGYYGKRRSE 188 Drosophila busckii
XP_017086937 114 FNIFIDNIGdsnlsetnrNIMWNLVAVALELGLEKTGKSLELLTRVQNRTAQLKNAFQSMLHDVHYDFGpgGFYGKERAK 193 Drosophila bipe...
XP_017104232 104 FDLFIPSIRdrnlslkdkDLIWNLTVTALNSGLEKTTESLYMLSVVQNKMAELKNLFRTMLHDFADDFGpsGFYGREKAE 183 Drosophila bipe...
XP_017089755 113 FRLTIPQIEddalsrndaELIWNLTATALELGLNKTTESLIILEDVLNRTTTLRDLLKSIAHEIDDDFGpkGHYGMWKDD 192 Drosophila bipe...
XP_016982868 112 MTTYVYLFEdyte--qvkELQKDCLNETLNNGIKLLTRSVELLDQSRNHVNTGITDLSNVMSKVTNAFRndQKEDTATIN 189 Drosophila rhop...
XP_001966203  93 FKTVLPVIRvkdlskddrDILYTIVSESVTKGVHKIAASLELLEDVLKNASELSDLFKSIEHKVHDDFRfgSGYYWKQKE 172 Drosophila anan...
Feature 1        #  #                                                          #   #      #      
1QOY_A       187 KIRKEayagaaagvvvgpfgl------------------------iisysiaagvvegkliPELKNKLKSVQNFFTTLSN 242 Escherichia col...
2WCD_A       178 KIRKEayagaaagvvagpfgl------------------------iisysiaagvvegkliPELKNKLKSVQNFFTTLSN 233 Escherichia col...
XP_003424984 191 LMNAIvesqksrqaliiagvislifgaiaafvi-gpvgvkldllqvfvplgleevirrqrqATYEEELQVIQTFFNILDE 269 jewel wasp
OXU31814     193 LKNAIaesqrarkillivgiigliftaivafv--tgpiglslalvtafppaiaavvkgqheATYEEQLQTIQIFLNILDE 270 Trichomalopsis ...
XP_017851438 189 INELAkrkvrqavrytifisglfdaiiitvks--rvghslslqaifinaglekvingekkkPSYSEQLETIQVFFNTLND 266 Drosophila busckii
XP_017086937 194 LQKGVdgslldrpltaif-------------------------------tvitkifnsnqkQTFKEQIELIERFFTFLTK 242 Drosophila bipe...
XP_017104232 184 MEQQImdaktgakvpvsafvgfmfgmlgsivf--gpigiglglkeaflvrgivekrdwdlkTFYRERLEIIDDLFKLLTK 261 Drosophila bipe...
XP_017089755 193 LGRKLteeqklrkaavsafigflfgavttllf--gpigvqiglqvalgvqsvqdriewqkkQTYKDQIEAINKFFIVLQE 270 Drosophila bipe...
XP_016982868 190 DLNKQtmnvlekslfng--------------------------------ivsiimvetiykPEVQKKFDLIKSSFDFMNE 237 Drosophila rhop...
XP_001966203 173 ELENKtheihrgrtalifggigaiftalgaiifgpigaavglaagvavaygvktlvewnerKDPKEQLKGIQCCFEIITK 252 Drosophila anan...
Feature 1             #      #   #  ##  #  ### ##               # #                   
1QOY_A       243 TVKQANKDIDAAKLKLTTEIAAIGEIKTETETtrfyv----dyddlMLSLLKEAAKKMINTCNEYQKRH 307 Escherichia coli K-12
2WCD_A       234 TVKQANKDIDAAKLKLTTEIAAIGEIKTETETtrfyv----dyddlMLSLLKEAAKKMINTCNEYQKRH 298 Escherichia coli K-12
XP_003424984 270 KINNASTIATQVDADLEEDKNNLYVLSGLISAaernkkmllmnspiMRARLVPSFRNLGNKCYEYTMWH 338 jewel wasp
OXU31814     271 RINKASEIANQINLDLAEDKNNLHELAGLISAagrnkqllltdsptVRPLLVPSFQKLGNTCHEYAMWH 339 Trichomalopsis sarcophagae
XP_017851438 267 KITHASEVATEVNKELEVDKKNLYALRGFLNGadtskh--llfhnhMRSLLKPSFENLSGQCIAYAKWH 333 Drosophila busckii
XP_017086937 243 KIEKATEIVKEMESNLEEDKSNLYRLQKHFEGandnkemllfdmalLRRQFIPDIKDLKDSCDEYVNWH 311 Drosophila bipectinata
XP_017104232 262 KIEMATEIVKDIDSLLQEDKTNLHKLRGVIEGantnkelllsdavfLRATFVEDIQILMNDCTNYVKWH 330 Drosophila bipectinata
XP_017089755 271 KVENATKIVEEINVTLEEDKLNLQALKGRIEGanndkdi-lkvspfLRKKFAPTLQGLVDQCMLYVEWH 338 Drosophila bipectinata
XP_016982868 238 KVRLSIKKGLEIKEKLSLEIVYITGLRGTVSSnkltf-----ggkyMFPVLKMSANKLKNECSTYQTRH 301 Drosophila rhopaloa
XP_001966203 253 KIKDAQKVLRDIIGALEEDRSNVIVLKGTCDSadqdkallkmqstvARNQFADNLKELQKQCEDYAKWH 321 Drosophila ananassae

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