Conserved Protein Domain Family
Kunitz_collagen_alpha1_XXVIII

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cd22628: Kunitz_collagen_alpha1_XXVIII 
Kunitz-type domain from the alpha1 chain of type XXVIII collagen, and similar proteins
This model includes the Kunitz-type domain from the alpha1 chain of type XXVIII collagen (collagen alpha-1(XXVIII) chain) and similar proteins. The zebrafish has four collagen XXVIII genes all of which are differentially expressed in the liver, thymus, muscle, intestine and skin; only the alpha1 chain contains the Kunitz domain which is often proteolytically processed. Mammals only contain the alpha1 collagen chain, expressed mostly in dorsal root ganglia and peripheral nerves. The Kunitz domain is found at the C-terminus, and is most related to Kunitz domains of papilin and alpha3(VI) collagen. This domain is similar to that of Kunitz-type proteinase inhibitors such as BPTI (bovine pancreatic trypsin inhibitor) that shows an alpha/beta fold with irregular secondary structure stabilized by three disulfide bonds.
Statistics
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PSSM-Id: 438671
Aligned: 30 rows
Threshold Bit Score: 118.538
Created: 16-Jul-2020
Updated: 17-Oct-2022
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q2UY09       1072 CLEAlKPGNCGEYVVRWYYDKqVNSCARFWFSGCNGSgNRFNSEKECQETC 1122 human
XP_005997683 1106 CNLTlDQGSCRSYVIKWYYDRqANACAQFWYGGCNGNaNRFEAEEECKKTC 1156 coelacanth
XP_007888177 1145 CELHlDQGTCRNYIIKWYYDKqANACAQFWYGGCNGNlNRFENEDECRKTC 1195 elephant shark
XP_007902963 1114 CAEPlNQGPCRNYVIKWYYDRmAEACVQFWYGGCEGNrNRFDNQQECTLKC 1164 elephant shark
XP_016289183  402 CQLKlDPGSCRVYVIKWYYDKqANACAQFWYGGCDGNaNRFNSEDECIKAC 452  gray short-tailed opossum
NP_001153314 1152 CQLSfVQGSCRNYVIRWYYEKqSNSCAQFWYGGCDGNdNRFHTEEECKTTC 1202 zebrafish
XP_021332654 1142 CKLLlDQGPCREYNIRWYYVPqANACAQFWYGGCEGNrNRFDTEEECKKTC 1192 zebrafish
XP_025008328 1086 CKLRlDQGPCRVYIIKWYYDKqANACAQFWYGGCDGNaNRFESEEECREAC 1136 chicken
TWW64017     1177 CGLPfDLGPCRNYEIHWYYDRqANACAKFWYGGCEGNkNRFNTEEECKRTC 1227 sansaifugu
XP_018091373 1169 CALPlDQGPCRTYIIKWYYDKqANSCAQFWYGGCNGNgNRFDTEDECKKTC 1219 African clawed frog
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