6VJZ


Conserved Protein Domain Family
Usa1_DBD

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cd22577: Usa1_DBD 
Click on image for an interactive view with Cn3D
C-terminal Der1-binding domain of U1 SNP1-associating protein 1 (Usa1) and similar proteins
Usa1 functions as a scaffold protein of the endoplasmic reticulum-associated degradation (ERAD; also known as endoplasmic reticulum quality control, ERQC) pathway involved in ubiquitin-dependent degradation of misfolded endoplasmic reticulum proteins. It is a component of the Hrd1 ubiquitin ligase complex, which is part of the ERAD-L and ERAD-M pathways responsible for the rapid degradation of soluble lumenal and membrane proteins with misfolded lumenal domains (ERAD-L), or ER-membrane proteins with misfolded transmembrane domains (ERAD-M). Usa1 plays essential roles in recruitment of Der1 to the Hrd1 ubiquitin ligase, as well as in regulation of the Hrd1p ubiquitin ligase. It is also involved in oligomerization of Hrd1 in its autoubiquitination and degradation. The model corresponds to the C-terminal Der1-binding domain of Usa1, which mediates the interaction with Der1 and is essential for ERAD-L in vivo.
Statistics
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PSSM-Id: 439344
Aligned: 7 rows
Threshold Bit Score: 78.2131
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
Der1 binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:Der1 binding site [polypeptide binding site]
Evidence:
  • Structure:6VJZ: Saccharomyces cerevisiae Usa1 interacts with Der1; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                      #  ##  #     #     
6VJZ_D       242 QIAEHNVLDVVLRYIIPDPVNDRVITAVIKNFVLFWVTLLPYVKEKLDD 290  baker's yeast
Q03714       741 QIAEHNVLDVVLRYIIPDPVNDRVITAVIKNFVLFWVTLLPYVKEKLDD 789  Saccharomyces cerevisiae S288C
NP_013683    741 QIAEHNVLDVVLRYIIPDPVNDRVITAVIKNFVLFWVTLLPYVKEKLDD 789  Saccharomyces cerevisiae S288C
OXB43444     811 FVEHQQVLDTCLEHVVPNPSRDSVFVAIPKNLVLFILLFFPYVKEKTLS 859  [Candida] glabrata
GCE97915     756 RIRQSQPTMTMLEQIIPNPTQDNIISAIVKNIILFILIFLPPFKHRVDA 804  Zygosaccharomyces mellis
XP_003678978 720 RLRELQVTTKITERVIPDPAHDSIPMAILKNVILFFLIIFPPVKNHVDV 768  Torulaspora delbrueckii
XP_446678    811 FVEHQQVLDTCLEHVVPNPSRDSVFVAIPKNLVLFILLFFPYVKEKTLS 859 

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