7C4J


Conserved Protein Domain Family
SNF6

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cd22571: SNF6 
Click on image for an interactive view with Cn3D
transcription regulatory protein SNF6 domain family
SNF6 is a nuclear protein involved in transcriptional activation in Saccharomyces cerevisiae. It is a component of SWI/SNF complex, an ATP-dependent chromatin remodeling complex, which is required for the positive and negative regulation of gene expression of a large number of genes. It changes chromatin structure by altering DNA-histone contacts within a nucleosome, leading eventually to a change in nucleosome position, thus facilitating or repressing binding of gene-specific transcription factors.
Statistics
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PSSM-Id: 439338
Aligned: 29 rows
Threshold Bit Score: 145.546
Created: 13-Oct-2021
Updated: 13-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 87 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Structure:7C4J: Saccharomyces cerevisiae SNF6 is a component of Swi/Snf complex in a nucleosome; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #  ## ######   ## ##### # ## ### ### ### #####################           
7C4J_C        70 QQQLNKQRQDFERVRLRPEQLsNIIHDESDTISFRSNLLKNFISSNDAFNMLSLTTVPCDRIEKSRLFSe---------- 139 Saccharomyces c...
ONH69480      10 RQRVQQQAQQQHHTQQTQDEI-GNMHDEADIMSFRSAATHRFVLNQELIENLTEKWIPLDNLVKPVPFStvqttktdvse 88  Cyberlindnera f...
XP_004180724  43 LPKVIKPTPITLLNRLDPELPhNVTHDESDTTSFRLSLLRTTPLYANILTNVVLNCNIPVSIKNRKIFNelign------ 116 Tetrapisispora ...
XP_001643816  17 QQHLQEAKYNFLNQRLLPENIsTIIHDESDTISYRSYLLKNFNSMSRNISVLLLNNNKEIIKPNLKFNTslinkd----- 91  Vanderwaltozyma...
KTB14688      55 VMGDDESVAEFEQRRLAAESMnAITHDESDTISFRNYLLANYLRGANYFNALTIHNVPVSRIKPPKLFQs---------- 124 [Candida] glabrata
XP_013808739  70 QQQLNKQRQDFERVRLRPEQLsNIIHDESDTISFRSNLLKNFISSNDAFNMLSLTTVPCDRIEKSRLFSe---------- 139 Apteryx austral...
AGO13327      31 HGMQQQKFERHRSQRLNPEQIgTSVHDESDTISFRNHLLANYILAAGWMDALTTQAVPVGRIGRPALYSe---------- 100 Saccharomycetac...
XP_003647420  35 QGSVQQKLEKHKSQRLNPEQIgTSVHDESDTISFRNHLLANYILTAEWMDVLTTQAVPVSRIRKPRIYSe---------- 104 Eremothecium cy...
XP_017988893  29 PILHQQKYERLRPQRLDPEQIgSSVHDESDTISFRNHLLENYILASEWIDVLTTQAVPISRVKKPNIYPe---------- 98  Eremothecium si...
NP_011838     70 QQQLNKQRQDFERVRLRPEQLsNIIHDESDTISFRSNLLKNFISSNDAFNMLSLTTVPCDRIEKSRLFSe---------- 139 Saccharomyces c...
Feature 1               ##  ##  ##  #                        #######  #  #                ##   # 
7C4J_C       140 -------KTIRYLMQKQHEMKTQAaelq-------------ekpLTPLKYTKLIAAAEdgsr-------stkDMIDAVFE 192 Saccharomyces c...
ONH69480      89 ihdelyfGNISLMKQKMEMLKKDIeeltkdk------dsvldkfGDSKFLLEHVESMSdayv-------dktPLNTDEIS 155 Cyberlindnera f...
XP_004180724 117 --wktqlIENEKIIEKLTDDLNQL--------------------DNANSLEEQMYDEFkdins-----iedyLDYNRTKR 169 Tetrapisispora ...
XP_001643816  92 -ylakqkLELEKINEKLNDEGNDInmv---------------neSLKDFYNKQLYKLNeinllpsdsnddniNSVLNSYL 155 Vanderwaltozyma...
KTB14688     125 ------pISLMELKKMIELQKAGIgkikavmdtwikeresmvstEHTKFYKSRMKVLDtdgl-------egiHHVVKNIE 191 [Candida] glabrata
XP_013808739 140 -------KTIRYLMQKQHEMKTQAaelq-------------ekpLTPLKYTKLIAAAEdgsr-------stkDMIDAVFE 192 Apteryx austral...
AGO13327     101 ------lLRPDDLQARKAAAAEEVaalea----------rldswTPDSAFRETYAELEkspld-----reavERALARYE 159 Saccharomycetac...
XP_003647420 105 ------eTRVEAMRQQLSGCLEEVeqlerrle----shakqglfGEPTPFRQCWKELSrnpfd-----kevlDRVQEKYE 169 Eremothecium cy...
XP_017988893  99 ------eLRLQHLEEQLRMRREQLtllekkveq---ldteldtsSQSVVLKECIHKLDqdifc-----aetvDDIQKKFE 164 Eremothecium si...
NP_011838    140 -------KTIRYLMQKQHEMKTQAaelq-------------ekpLTPLKYTKLIAAAEdgsr-------stkDMIDAVFE 192 Saccharomyces c...
Feature 1           ##############   ##              ##                                     
7C4J_C       193 QDSHLRYQPDGVVVHRDDPALVgklrgdLREAPADYWTHAYRDVLA------QYHEAKERIRQKEVTAGEAQDEA 261 Saccharomyces cerevi...
ONH69480     156 TKFTERFKTRIITEPYETKSIPslr-tdNSEAPANYWEDLKKKREEvdnansLALNKASDEDIVMNGDYQLGDDG 229 Cyberlindnera fabianii
XP_004180724 170 SNPLIYYQQDDVVFHDKDAFKHln--nnLDKAPDDYWIKRKELKLK------QKREALERKKKEEQLAKEKAELE 236 Tetrapisispora blatt...
XP_001643816 156 EKFNFKSQDNNIKFYPKEKFNHfk--ndTNEAPADYWTNLYKSKKEe-----QKKKDLEALRLQEEQKRREDELK 223 Vanderwaltozyma poly...
KTB14688     192 SRLGGRLQDRAYHLYDPEVFETkfr-gdMREAPEDYWEKYPELVKE------RKEKEAKMLREKEEEELRKKEEE 259 [Candida] glabrata
XP_013808739 193 QDSHLRYQPDPVVVHRDDPALVgklrgdLREAPADYWTHAYRDVLA------QYHEAKERIRQKEVTAGEAQDEA 261 Apteryx australis ma...
AGO13327     160 HHFRRTARMQQPVVFRSCGGRPqp---aGGCAPDNYWSEIYPRLRE------QRARRLFEERKRQREEEKLKEQA 225 Saccharomycetaceae s...
XP_003647420 170 KHFGLTIRPDTTVIYRNRFSYAah--lvGNKAPDNYWTELYPQLKE------RELQLQREQLKRERLEKERIKME 236 Eremothecium cymbala...
XP_017988893 165 THFGVTIRAGAVIMHRDKFKFPsq---vGNKAPDNYWTEVYPQILD------RNLQEEREKLELEQLEKERLQQE 230 Eremothecium sinecaudum
NP_011838    193 QDSHLRYQPDGVVVHRDDPALVgklrgdLREAPADYWTHAYRDVLA------QYHEAKERIRQKEVTAGEAQDEA 261 Saccharomyces cerevi...

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