6LQZ


Conserved Protein Domain Family
EBM_STH1

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cd22568: EBM_STH1 
Click on image for an interactive view with Cn3D
ET-binding motif (EBM) of Saccharomyces cerevisiae ATP-dependent helicase STH1 and similar proteins
STH1/Sth1p (EC 3.6.4.12; also called nuclear protein STH1/NPS1, chromatin structure-remodeling complex protein STH1, or SNF2 homolog) is a Snf2p/Swi2p homolog that acts as a catalytic component of the chromatin structure-remodeling complex (RSC), which is involved in transcription regulation and nucleosome positioning. RSC is responsible for the transfer of a histone octamer from a nucleosome core particle to naked DNA. STH1 is an essential ATPase in RSC and differs from Snf/Swi in its interactions with histones and chromatin-associated proteins. It is a DNA translocase capable of nucleosome remodeling and is required for full expression of early meiotic genes. STH1 plays an essential role for mitotic growth and repression of CHA1 expression. It is also involved in G2 phase control. This model corresponds to a conserved region of STH1, which is responsible for the binding of the extra-terminal (ET) domain of TBP associated factor 14 (Taf14), a transcriptional regulator that controls diverse physiological processes and that physically interacts with at least seven nuclear complexes in yeast.
Statistics
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PSSM-Id: 439335
Aligned: 5 rows
Threshold Bit Score: 65.1178
Created: 13-Oct-2021
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ET binding site
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ET binding site [polypeptide binding site]
Evidence:
  • Structure:6LQZ; Saccharomyces cerevisiae Sth1 in complex with extra-terminal (ET) domain of Taf14, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           # ##########                            
6LQZ_B          2 EVKSSSVEIINGSESKKKKPKLTVKIKLNKTTVlENNDGKRAEEKPESKSPAKKTAAK 59   Saccharomyces cerevisiae S288C
AJR47669     1183 EVKSSSVEIINGSESKKKKPKLTVKIKLNKTTVlENNDSKRAEEKPESKSPAKKTAAK 1240 Saccharomyces cerevisiae YJM1381
GAA23994     1183 EVKSSSVEIINGSESKKKKPKLTVKIKLNKTTVlEHNDSKRAEEKPESKSPAKKTAAK 1240 Saccharomyces cerevisiae Kyokai no. 7
XP_018221496 1183 ELKNNSVEIIGGSESRRKKPKLTVKIKLKKTPAmDNNDTSQPEEKPEGKSEEKSPVKK 1240 Saccharomyces eubayanus
EJT44067     1183 ELKSSSVEIINGSESKKKKPKLTVKIKLKKTTVtDNNDIDQPEEKQEVKFPAKKAVAK 1240 Saccharomyces kudriavzevii IFO 1802

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