2XR1,2YCB,3AF5


Conserved Protein Domain Family
KH-II_CPSF_arch_rpt1

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cd22532: KH-II_CPSF_arch_rpt1 
first type II K-homology (KH) RNA-binding domain found in archaeal cleavage and polyadenylation specificity factor (CPSF) and similar proteins
The archaeal CPSFs are predicted to be metal-dependent RNases belonging to the beta-CASP family, a subgroup of enzymes within the metallo-beta-lactamase fold. Within the CPSF family, all archaeal genomes contain one member with two N-terminal type II K-homology (KH) domains and one without. This family includes the CPSF homologs from archaea possessing N-terminal KH domains. This model corresponds to the first KH domain, which is a non-canonical type II KH domain that does not contain the signature motif GXXG (where X represents any amino acid).
Statistics
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PSSM-Id: 411789
Aligned: 22 rows
Threshold Bit Score: 61.0771
Created: 10-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2XR1_A          9 VLLDLKHKIEKNLPAgvTITDVEFEGPQLVLYTEEPRKFADDgnIIRNLAKELRTRIAMRPD 70  Methanosarcina mazei
Q5V2K7          7 TLDRIKAQVEEETPDdiEIESVAFEGPELVIYTPDAQTVANRdgIVRNLAQTLRKRINVRPT 68  Haloarcula marismortui
Q8TJB4          6 VLLDLKHKIEKNLPAgvTITDVEFEGPQLVLYTEEPRKFADDgnIIRNLAKELRTRIAMRPD 67  Methanosarcina acetivorans
Q9HKI6          6 YIEETKNIFNRLYPDn-KITDIDYEGPTIVVYTKDPELFAKRddLVRQIAQEIRRRIAIRSD 66  Thermoplasma acidophilum
Q74MJ3         19 TFMELLEEIFKYIDKn-KIIGYRFEGPKVVLFTRDKELLVKApqILQEIAKKVRRRIHIRYD 79  Nanoarchaeum equitans
Q2FR65          6 RLKEIQEKIKKKVPKgiKVSSVEFEGPELVIYTDDPKTFADQddLIKILARDIRKRIVVRPT 67  Methanospirillum hungatei JF-1
jgi:Smar_0937  10 GRAELLKRILREIPPdlVLTNIEFEGPEIVLYVRNRKAIAKYldLVKNIAKKVRKRVVIRAD 71  Staphylothermus marinus F1
jgi:Vdis_1675   4 LKEEMEKKIMEILPPeaKFSRVDFEGPNVIIYVMNPRYVMEHseYIKTLAKELKKYIIIRGD 65  Vulcanisaeta distributa DSM 14429
WP_011007526    2 SFVEIENKVKAILSGi-EIVKVNYEGPNLCIYVKRPTEDVID--MIGEVAKTLKKRVILRVD 60  Pyrobaculum aerophilum
WP_012310054    1 MSEDLKAKVKKYFSQyaKVEKVELEGPFVTLLVENPKEILDKpdLVVNAAKTLKKKIIVLAS 62  Candidatus Korarchaeum cryptofilum
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