2NN6,2JA9,4IFD,4OO1,5C0W,5G06,5JEA,6D6Q,6H25


Conserved Protein Domain Family
KH-I_Rrp40

?
cd22526: KH-I_Rrp40 
type I K homology (KH) RNA-binding domain found in exosome complex component Rrp40 and similar proteins
Rrp40, also called exosome component 3 (EXOSC3), or ribosomal RNA-processing protein 40, is a non-catalytic component of the RNA exosome complex which has 3'-->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. Mutations of EXOSC3 gene are associated with neurological diseases. Members in this subfamily contain a divergent KH domain that lacks the RNA-binding GXXG motif.
Statistics
?
PSSM-Id: 411954
Aligned: 72 rows
Threshold Bit Score: 77.9442
Created: 10-Aug-2020
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
 
oligomer
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                    ###                                                             #               
2NN6_G                   210 DGLLFKVT-LGLIRKLLApd--cEIIQEVGKl-yPLEIVFGMNGRIWVKAKt--------iQQTLILANILEACehm--- 274 human
WGS:AAFB:cds.EHI_004770A 148 GGWAFSVP-QSMCRRIMGdg--cCVLTCIGEy-tPFEIAVGINGMVWVRTPn--------vLNDVIVESCIVQClgvvek 215 Ent...
Q6C3P8                   215 DGFCFDAP-IAFTRQLLFkg--hTVLDTIGEl-vPFEIAIGVNGKIWVKSEd--------vPTTLKIYQCIDKCrew--- 279 Yar...
Q8IEP5                   161 DGFVFSVN-IASAKSLIGdr--cYILDLIGQd-iKYEIAVGHNGRIWIKANd--------pLEINLIHSALKHSfgk--- 225 Pla...
Q22XJ7                   165 DGMVSNIS-IEYARSIIGqg--dFVFRAFKKyikSFETAIGSNGKVWIKTLq--------pQNTILILNVLNKCenm--- 230 Tet...
Q4DUC2                   209 DGTVVRVP-ISYARSLLAsdgasRLLSLLGEr-vPFEVCVGVNGFVWVRGQtsdvdaaaaaRRTVAVASCIVESqdda-- 284 Try...
EEA05172                 173 DGIIMNIP-ISLTNILLAdh--cYILNTISKy-fPFEICVGQNSIIWFTASt--------vQQLLLIMSSLKIAnkc--- 237 Cry...
jgi:MICPUN_114077        158 EGFFPRCN-SKFARNMQSrs-feTVLGILGSa-vSFEIATGHNGRVWIATSt--------rQQAILIVKALSGCfy---- 222 Mic...
XP_002778446             173 CGLQATVP-LWQAKSLQAtn--sTVMASLGRh-fVFESAIGVNGRCWISAAa--------pNVAVMVSRILSGShkl--- 237 Per...
KEI39655                 193 GGMILRDVpLRKCRELLAdk--dAALSELGKk-mPFELAIGVNGRIWLKGAdtas--tlelYQTLANMCSVQVAgnr--- 264 Mix...
Feature 1                                  
2NN6_G                   275 -tsdQRKQIFSRLA 287 human
WGS:AAFB:cds.EHI_004770A 216 nvpgTIKLVWESWK 229 Entamoeba histolytica HM-1:IMSS
Q6C3P8                   280 -pedQVRENVEQIM 292 Yarrowia lipolytica
Q8IEP5                   226 -traQMNVLWKSIY 238 Plasmodium falciparum 3D7
Q22XJ7                   231 -sieQIKVYVDQIS 243 Tetrahymena thermophila SB210
Q4DUC2                   285 -tpeEMESRVKSYF 297 Trypanosoma cruzi
EEA05172                 238 -sksEFEVIVENFW 250 Cryptosporidium muris RN66
jgi:MICPUN_114077        223 --psASCMAAHDYS 234 Micromonas commoda
XP_002778446             238 -sqaHMEAMCSKMA 250 Perkinsus marinus ATCC 50983
KEI39655                 265 -psaAMLAFERLYF 277 Mixia osmundae IAM 14324

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap