2AXY,1ZTG,2JZX,3VKE


Conserved Protein Domain Family
KH-I_PCBP1_2_rpt1

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cd22515: KH-I_PCBP1_2_rpt1 
first type I K homology (KH) RNA-binding domain found in poly(rC)-binding protein 1 (PCBP1) and similar proteins
The family includes PCBP1 (also called alpha-CP1, or heterogeneous nuclear ribonucleoprotein E1, or hnRNP E1, or nucleic acid-binding protein SUB2.3) and PCBP2 (also called alpha-CP2, or heterogeneous nuclear ribonucleoprotein E2, or hnRNP E2). They are single-stranded nucleic acid binding proteins that bind preferentially to oligo dC. They act as iron chaperones for ferritin. In case of infection by poliovirus, PCBP1 plays a role in initiation of viral RNA replication in concert with the viral protein 3CD. PCBP2 is a major cellular poly(rC)-binding protein. It also binds poly(rU). PCBP2 negatively regulates cellular antiviral responses mediated by MAVS signaling. It acts as an adapter between MAVS and the E3 ubiquitin ligase ITCH, therefore triggering MAVS ubiquitination and degradation. PCBP2 forms a metabolon with the heme oxygenase 1/cytochrome P450 reductase complex for heme catabolism and iron transfer. Both PCBP1 and PCBP2 contain three K-homology (KH) RNA-binding domains. The model corresponds to the first one.
Statistics
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PSSM-Id: 411943
Aligned: 11 rows
Threshold Bit Score: 125.125
Created: 14-Aug-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
DNA bindingGXXG motif
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:2AXY: Homo sapiens PCBP2 binds telomeric DNA; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 #   ## #####  #   #       #### #   #                         
2AXY_A         4 TLTIRLLXHGKEVGSIIGKKGESVKKXREESGARINISEGNCPERIITLAGPTNAIFKAFAXIIDKLEED 73  human
1ZTG_A         2 ILTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEED 71  human
CAB50743      13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFSMIIDKLEED 82  African clawed frog
Q15366        13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEED 82  human
KFO07666      13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEV 82  East African grey crowned...
XP_005991463  13 TLTIRLLMHGKEVGSIIGKKGESVKKMRDESGARINISEGNCPERIITLAGPTTAIFKAFAMIIDKLEED 82  coelacanth
NP_957486     13 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTTAIFKAFSMIIEKLEED 82  zebrafish
XP_007909741  13 TLTLRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTLSGPTNAIFKAFAMITHKLEED 82  elephant shark
2JZX_A         4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEED 73  human
3VKE_A         2 MLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNSPERIITLTGPTNAIFKAFAMIIDKLEED 71  human
Q15365        13 TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIITLTGPTNAIFKAFAMIIDKLEED 82  human

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