6ROL


Conserved Protein Domain Family
KH-I_IGF2BP2_rpt3

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cd22497: KH-I_IGF2BP2_rpt3 
third type I K homology (KH) RNA-binding domain found in insulin-like growth factor 2 mRNA-binding protein 2 (IGF2BP2) and similar proteins
IGF2BP2, also called IGF2 mRNA-binding protein 2 (IMP-2), or hepatocellular carcinoma autoantigen p62, or IGF-II mRNA-binding protein 2, or VICKZ family member 2 (VICKZ2), is an RNA-binding factor that recruits target transcripts to cytoplasmic protein-RNA complexes (mRNPs). It functions by binding to the 5' UTR of the insulin-like growth factor 2 (IGF2) mRNA and regulating IGF2 translation. It also binds to beta-actin/ACTB and MYC transcripts. IGF2BP2 can form homooligomers and heterooligomers with IGF2BP1 and IGF2BP3 in an RNA-dependent manner. It contains four K-homology (KH) RNA-binding domains which are important in RNA binding and are known to be involved in RNA synthesis and metabolism. The model corresponds to the third one.
Statistics
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PSSM-Id: 411925
Aligned: 6 rows
Threshold Bit Score: 142.54
Created: 19-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative RNAGXXG motif
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Gallus gallus IGF2BP1 (2N8L) binds RNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ### #####  ##         #####        #                            
6ROL_A         4 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGpdvSERMVIITGPPEAQFKAQGRIFGKLKEENFF 80  human
AAI55088      87 EQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAESpdvTQRMVIITGPPEAQFKAQGRIFGKLKEENFF 163 zebrafish
Q9Y6M1       426 EQEIVNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGpdvSERMVIITGPPEAQFKAQGRIFGKLKEENFF 502 human
OWK52195     413 EQEVVNLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGpdaSERMVIITGPPEAQFKAQGRIFGKLKEENFF 489 Bengalese finch
XP_029462340 413 EQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGpeiTERMVIITGPPEAQFKAQGRIFGKLKEENFF 489 two-lined caecilian
XP_005994331 390 EQEVVYLFIPTQAVGAIIGKKGQHIKQLARFAGASIKIAPAEGvevHERMVIITGTPEAQFKAQGRIFGKLKEENFF 466 coelacanth

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