2N8L,2N8M,3KRM


Conserved Protein Domain Family
KH-I_IGF2BP1_rpt3

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cd22496: KH-I_IGF2BP1_rpt3 
third type I K homology (KH) RNA-binding domain found in insulin-like growth factor 2 mRNA-binding protein 1 (IGF2BP1) and similar proteins
IGF2BP1, also called IGF2 mRNA-binding protein 1 (IMP-1), or coding region determinant-binding protein (CRD-BP), or IGF-II mRNA-binding protein 1, or VICKZ family member 1 (VICKZ1), or zipcode-binding protein 1 (ZBP-1), is an RNA-binding factor that recruits target transcripts to cytoplasmic protein-RNA complexes (mRNPs). It functions by binding to the 5' UTR of the insulin-like growth factor 2 (IGF2) mRNA and regulating IGF2 translation. It regulates localized beta-actin/ACTB mRNA translation, a crucial process for cell polarity, cell migration and neurite outgrowth. IGF2BP1 can form homodimers and heterodimers with IGF2BP1 and IGF2BP3. It contains four K-homology (KH) RNA-binding domains which are important in RNA binding and are known to be involved in RNA synthesis and metabolism. The model corresponds to the third one.
Statistics
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PSSM-Id: 411924
Aligned: 7 rows
Threshold Bit Score: 138.614
Created: 19-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA bindingGXXG motif
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ### #####  ##         #####        #                           
2N8L_A        21 EQETVHVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPEtPDSKVRMVVITGPPEAQFKAQGRIYGKLKEENF 96  chicken
2N8M_A        21 EQETVHVFIPAQAVGAIIGDDGQHIKQLSRFASASIKIAPPEtPDSKVRMVVITGPPEAQFKAQGRIYGKLKEENF 96  chicken
3KRM_A         1 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPEtPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENF 76  human
XP_007902598 328 EQETVHVFIPAQAVGAIIGKKGQHIKQLSRFAGASIKIAPAEsPDTKQRMVIITGPPEAQFKAQGRIYGKLKEENF 403 elephant shark
Q9NZI8       404 EQEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPEtPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENF 479 human
Q08CK7       406 EQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKIAPAEaPDSKMRMVIVTGPPEAQFKAQGRIYGKLKEENF 481 zebrafish
XP_014340525 401 EQETVHIFIPAQAVGAIIGKKGQHIKQLSRFAGASIKIAPPEaPDSKVRMVIVSGPPEAQFKKERNCCLIFQAQGR 476 coelacanth

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