Conserved Protein Domain Family
KH-I_AtRH42_like

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cd22475: KH-I_AtRH42_like 
type I K homology (KH) RNA-binding domain found in Arabidopsis thaliana DEAD-box ATP-dependent RNA helicase RH42 and similar proteins
RH42, also called DEAD-box RNA helicase RCF1, or REGULATOR OF CBF GENE EXPRESSION 1, is a helicase required for pre-mRNA splicing, cold-responsive gene regulation and cold tolerance. Members in this subfamily contain a divergent KH domain that lacks the RNA-binding GXXG motif.
Statistics
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PSSM-Id: 411903
Aligned: 12 rows
Threshold Bit Score: 149.849
Created: 20-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q8H0U8       1063 MPEHYEAELEINDFPQNARWKVTHKETLGPISEWtGAAITTRGQFYPTGRIPg-pGERKLYLFIEGPSEKSVKHAKAELK 1141 thale cress
EFJ09568      437 LQERYEAELEINDFPQHARWKVTHKDALGQISEWtGAAITTRGQFFPPGKIPg-pGERKLYLFIEGGSETSVKKAKGEIK 515  Selaginella m...
XP_024378026 1138 APESYEIELEINDFPQHARWKVTHKDALGQISEWtGAAITTRGQYFPPGKVPa-pGERKLFLFIEGPTEASVKKAKAEVK 1216 Physcomitrell...
XP_004338092  868 EPTHFECDLEINDYPQQARWKVTHKDALYQITELtGAAITTRGTFFPPGKTPg-pGERKLFLFIEGPSEQSVKEARTEIK 946  Acanthamoeba ...
Q9SF41        886 IPEHYEAELEINDFPQNARWKVTHKETLGPISEWsGASITTRGKFYEAGRIPg-pEERKLYLFVEGPTEISVKTAKAELK 964  thale cress
Q553B1       1054 NQTHFIEELEINDYSQQARWKVTHKDALLEITNFtNTTITTKGTFFPPNKIPa-pGERKLYLYIEGPSDASVKNAKSDIK 1132 Dictyostelium...
PSC68276     1174 PAKHFETELEINDFPQHARWKVTHRQTILDIGDL-GAAVVVKGRYYKLGTAPgpsDERKLYLHIQGPTAEIVKRAKQEVK 1252 Micractinium ...
PNW72236     1323 PAGGFEAELEINDFPQHARWKITHRETMNQINELtGAALTVRGTYVQPGRPVp-eGERKLFLLIEGPTEQHVKKAKAEIK 1401 Chlamydomonas...
OUS47703      970 TGSHFETELEINDFPQFARYKVTQKETIAQIMEMtGAAVTAKGQYAQPGRPLa-pGDRKLYLLIEGPSERVVKEGKNYVK 1048 Ostreococcus ...
XP_005830092  999 ENDHYSEELEINDYPQHARWKATHRDSITPIIEFcDVCVTAKGIYVKPGLNPp-pGERKLYLLVEGDSEMKVKSAINQES 1077 Guillardia th...
GAX93187     2236 DEGHFYEELEINDYPQQARWKVTQRDASERVSELtGVAIITRGSFVPPGRKPn-pGERKLYLAIEGPTRAAVLEAKEELQ 2314 Pythium insid...
PXF43711      873 SESRFACELEINDYPQHARWQVTRKNSLNDVEEFtGCVITTRGNYYPSGRNPp-pGERKLHFLIEGPTRHAVKMARRDIR 951  Gracilariopsi...
Q8H0U8       1142 RVLEDITnqamsslPGGASGRYSV 1165 thale cress
EFJ09568      516 RILEESTsnm-vlqPAVQPGKYSV 538  Selaginella moellendorffii
XP_024378026 1217 RILEESTsaaiqlpGPAQPGKYSV 1240 Physcomitrella patens
XP_004338092  947 KILEEAAlnvlargPEKPAGKYRF 970  Acanthamoeba castellanii str. Neff
Q9SF41        965 RVLEDITnqtfslpGGAQSGRYSV 988  thale cress
Q553B1       1133 KILDEVQs------THQSTGKYSV 1150 Dictyostelium discoideum
PSC68276     1253 RILEESTekamrreAPSGPGRYSV 1276 Micractinium conductrix
PNW72236     1402 KILEETTeki-mrrDAPAAGRYSV 1424 Chlamydomonas reinhardtii
OUS47703     1049 QIIEQAIakqalpgGGQPQGRYRV 1072 Ostreococcus tauri
XP_005830092 1078 VRSPGELr-----vDHGVRGRTPA 1096 Guillardia theta CCMP2712
GAX93187     2315 RILDETTlqv--glGGERYGKYNL 2336 Pythium insidiosum
PXF43711      952 QKLEEASeis--rpSDNMYSKYSV 973  Gracilariopsis chorda
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