Conserved Protein Domain Family
KH-I_KHDRBS1

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cd22468: KH-I_KHDRBS1 
type I K homology (KH) RNA-binding domain found in KH domain-containing, RNA-binding, signal transduction-associated protein 1 (KHDRBS1) and similar proteins
KHDRBS1, also called GAP-associated tyrosine phosphoprotein p62, or Src-associated in mitosis 68 kDa protein, or Sam68, or p21 Ras GTPase-activating protein-associated p62, or p68, is an RNA-binding protein that plays a role in the regulation of alternative splicing and influences mRNA splice site selection and exon inclusion. It binds to RNA containing 5'-[AU]UAA-3' as a bipartite motif spaced by more than 15 nucleotides. It also binds poly(A). KHDRBS1 acts as a putative regulator of mRNA stability and/or translation rates and mediates mRNA nuclear export. It is recruited and tyrosine phosphorylated by several receptor systems, for example the T-cell, leptin and insulin receptors.
Statistics
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PSSM-Id: 411896
Aligned: 5 rows
Threshold Bit Score: 217.576
Created: 19-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative RNAGXXG motif
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on the structure evidence that Homo sapiens KHDRBS3 (5ELT) binds RNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           # ### #####  ##         ###    ###                           
Q07666       152 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFI 231 human
XP_014348340  56 KNIKLKERILIPVKQYPKFNFVGKILGPQGNTIKRLQEETSAKISVLGKGSMRDKSKEEELRKGGDPKYSHLNMDLHVFI 135 coelacanth
NP_998400     55 KNIKLKERILIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKNKEEELRKNGEPKYAHLSMELHVFI 134 zebrafish
XP_018105055  57 KNMKLKERILIPVKLYPKFNFVGKILGPQGNTIKRLQEDTGAKISVLGKGSMRDKAKEEQLRKGGDPKYSHLNMDLHVFI 136 African clawed ...
Q8UUW7       135 KNMKLKERVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRDKAKEEELRKGGDPKYAHLNMDLHVFI 214 chicken
Feature 1                                  
Q07666       232 EVFGPPCEAYALMAHAMEEVKKFLVP 257 human
XP_014348340 136 EVFAPACEAYARMAHAMEEVKKFLIP 161 coelacanth
NP_998400    135 EVFAPVPDAYMRMAHAMEEIKKFLFP 160 zebrafish
XP_018105055 137 EVFGPPCESYTRMAHAMEEVKKFLVP 162 African clawed frog
Q8UUW7       215 EVFGPPCEAYALMAHAMEEVKKFLVP 240 chicken

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