Conserved Protein Domain Family
KH-I_SPIN1_like
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cd22467: KH-I_SPIN1_like 
type I K homology (KH) RNA-binding domain found in Oryza sativa SPL11-interacting protein 1 (SPIN1) and similar proteins
SPIN1 is a K homology domain protein negatively regulated and ubiquitinated by the E3 ubiquitin ligase SPL11. It is involved in flowering time control in rice. SPIN1 binds DNA and RNA in vitro.
Links
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Statistics
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PSSM-Id: 411895
Aligned: 5 rows
Threshold Bit Score: 198.099
Created: 27-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
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putative RNAGXXG motif
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:based on the structure evidence that Homo sapiens Quaking protein (4JVH) binds RNA
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Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                        # ### #####   #        #####   # #             #                
Q75GR5       133 KKILRLDVPVDSYPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDPGKEDKLRGKPGYEHLSDPLHILIEAEFP 212 Japanese rice
Q8GWR3       146 KKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELP 225 thale cress
EFJ19362     135 KKTLRIEIPTDDYPNFNFVGRLLGPRGLSLKRVENETGCRVMIRGRGSIKDAAKEEKMRDKPGYEHLNEPLHVLVEAELP 214 Selaginella moe...
ABK25791     145 KTVLRMDVPADKFPHFNFVGRLLGPRGNSLKRVEATTGCRVYIRGRGSVKDSAKEEKLKDKPGYEHLNEPLHVLIEAELP 224 Sitka spruce
XP_024400673 128 KRTQRIDVPVDKYPNYNFVGRILGPRGNSLKRVEATTGCRVLIRGRGSIKDTAKEDKMRDKPGFEHLNEPLHVLIEAELP 207 Physcomitrella ...

Feature 1                             
Q75GR5       213 ASIIDARLRHAQEVIEELLKP 233 Japanese rice
Q8GWR3       226 EDIINSRLEHAVHFLESLLKP 246 thale cress
EFJ19362     215 ANQIDTHLQYAQEIIEDVLRP 235 Selaginella moellendorffii
ABK25791     225 SNIIDARMKQAFEIIDDLLKP 245 Sitka spruce
XP_024400673 208 ANIIEQRLIHAREILQELLKP 228 Physcomitrella patens

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