Conserved Protein Domain Family
KH-I_Rnc1_rpt2

?
cd22456: KH-I_Rnc1_rpt2 
second type I K homology (KH) RNA-binding domain found in Schizosaccharomyces pombe RNA-binding protein Rnc1 and similar proteins
Rnc1, also called RNA-binding protein that suppresses calcineurin deletion 1, is an RNA-binding protein that acts as an important regulator of the posttranscriptional expression of the MAPK phosphatase Pmp1 in fission yeast. It binds and stabilizes pmp1 mRNA and hence acts as a negative regulator of pmk1 signaling. Overexpression of Rnc1 suppresses the Cl(-) sensitivity of calcineurin deletion. The nuclear export of Rnc1 requires mRNA-binding ability and the mRNA export factor Rae1. Rnc1 contains three K-homology (KH) RNA-binding domains. The model corresponds to the second one.
Statistics
?
PSSM-Id: 411884
Aligned: 10 rows
Threshold Bit Score: 98.5228
Created: 20-Aug-2020
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                # ### #####  ##   ##    ####                                  
O74919       180 KLRLLIAHSLMGSIIGRNGLRIKLI-QDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAAIWEIGKCLI 248 Schizosaccharomyces pombe...
Q5KIG3       118 SIRLLISHNLMGTVIGRSGLKIKQI-QDMSGARMVASKEMLPQSTERVVEVQGSVDAIKTAVLEIGKCLL 186 Cryptococcus neoformans
KAB8343253   122 PIRLLISHNQMGTVIGRQGLKIKQI-QDGSGVRMVAQKEMLPQSTERIVEVTGTPDGLQKAIWEIGKCLI 190 Carpinus fangiana
KXS09641     140 TLQLLIPDSMAGAIIGKGGVQIKEL-QRNSKARIMVGKEVLRGSTEKILSVQGNPESLENAVLSLGRVII 208 Gonapodya prolifera JEL478
PVU95098     367 AIRFLIPHRTCGAIIGYNSDTLHSIkQKGKAYRLKVYQEFFCSSRERIIEVIGTPKSVREVTLFIAKQVE 436 Smittium simulii
P38199       158 YVRLIVANSHISSIIGKAGATIKSL-INKHGVKIVASKDFLPASDERIIEIQGFPGSITNVLIEISEIIL 226 Saccharomyces cerevisiae ...
CCJ30285      73 RVRLAIPHIFIEPLIGKHGSRINEI-QKISRAHITASDSLLPLSTERTLVIYGTEDAIYAAIFHVSITLI 141 Pneumocystis jirovecii
586350       150 SINLLIPHHLMGCIIGKRGSRLREI-EDLSAAKLFASPNQLLLSNDRILTINGVPDAIHIATFYISQTLL 218 Saccharomyces cerevisiae ...
CAE76284     209 PLRLLIPHVLIGSIIGKGGARIKEI-QEASGARLNASDSCLPLSTERSLVVMGVADAVHIATYYVGSTLL 277 Neurospora crassa
XP_022202259 199 PLRLLIPHILIGSIIGKGGARIKEI-QDASGARLNASDSCLPMSSERSLVVMGVADAVHIATYYVGSTLL 267 brown planthopper

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap