Conserved Protein Domain Family
KH-I_Rnc1_rpt1

?
cd22455: KH-I_Rnc1_rpt1 
first type I K homology (KH) RNA-binding domain found in Schizosaccharomyces pombe RNA-binding protein Rnc1 and similar proteins
Rnc1, also called RNA-binding protein that suppresses calcineurin deletion 1, is an RNA-binding protein that acts as an important regulator of the posttranscriptional expression of the MAPK phosphatase Pmp1 in fission yeast. It binds and stabilizes pmp1 mRNA and hence acts as a negative regulator of pmk1 signaling. Overexpression of Rnc1 suppresses the Cl(-) sensitivity of calcineurin deletion. The nuclear export of Rnc1 requires mRNA-binding ability and the mRNA export factor Rae1. Rnc1 contains three K-homology (KH) RNA-binding domains. The model corresponds to the first one.
Statistics
?
PSSM-Id: 411883
Aligned: 13 rows
Threshold Bit Score: 100.447
Created: 20-Aug-2020
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ### #####  ##  ##    ####                                  
O74919        94 LTLRALLSTREAGIIIGKAGKNVAELRStTNVKAGVTKAVPNVHDRVLTISGPLENVVRAYRFIIDIFAK 163  Schizosaccharomyces pomb...
Q5KIG3        31 LSLRSLVSTKEAGIIIGKSGATIATIRDsTGVKAGVSKVVQGVQDRVLSVTGDLEGVASAYAEVARLLLE 100  Cryptococcus neoformans
RYE83653      28 LTIRALVSTKEAGIIIGKAGATIAQIRNaTGVKAGVSKVVQGVQDRVLSVSGEVEGIATAFSEVARLLLE 97   Methanosarcinales archaeon
XP_018227601  72 LTLRALVSTKEAGIIIGRQGKNVAELRGvNGIKAGVSKVVPNIYDRVLTISGTLEGVSKAYGTIAQSFIN 141  Pneumocystis carinii B80
KAB8343253    35 LTLRAIVTSKEAGVIIGKAGKNVADLRDeTGVRAGVSKVVPGVHDRVLTVTGDLESISKAYGIVAKSLLE 104  Carpinus fangiana
ODQ73277      53 LTLRALVSSKEAGVIIGKQGKNVADLREaTGVKAGVSKPVPGVHDRVLSVTGTLEGVAKAYSMAAQTLVD 122  Lipomyces starkeyi NRRL ...
TIA94064     580 LVLRCLVDTRDAAVLIGRQGLNIARIRQtAGTKLNISNSLPSNPERVVTVSGKLDAVSKAFGLVVRTLND 649  Wallemia ichthyophaga
ODQ75112      64 VSLRCLVSSREAAALIGQKGENITLLRQtAGVRCSFSDNIKGVTERIVTISGPVEGVSKACGLLVRTIFS 133  Lipomyces starkeyi NRRL ...
XP_022202259 115 IHIRAVISSPEAATIIGKGGENVSNIRKlSGAKCTVSDYQKGAVERILTVSGIVDAVAKAFGLIIRTLNN 184  brown planthopper
CAE76284     125 IHVRSVISSPEAATIIGKGGENVSKIREmSNAKCTVSDYQKGAVERILTVSGVVDAVAKAFGLIIRTLNN 194  Neurospora crassa
XP_011393898  50 LTLRAIVSSKEAGVIIGKGGQNVANLRDeTGVKAGVSKVVQGVHDRVLTITGGCDAVSKAYAVVARSLLE 119  Neurospora crassa OR74A
P38199        44 INHRLLLSLKEAAKIIGTKGSTISRIRAaNAVKIGISEKVPGCSDRILSCAGNVINVANAIGDIVDVLNK 113  Saccharomyces cerevisiae...
XP_003677791  23 LEMRALMLDETTKLIIGDGSETIRQLRAeSDVKIWFSKQVYGNEHRILFVKGLAENVAQTFGSIARILAM 92   Naumovozyma castellii CB...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap