Conserved Protein Domain Family
KH-I_ScSCP160_rpt5

?
cd22450: KH-I_ScSCP160_rpt5 
fifth type I K homology (KH) RNA-binding domain found in Saccharomyces cerevisiae Protein SCP160 and similar proteins
SCP160, also called protein HX, is a new yeast protein associated with the nuclear membrane and the endoplasmic reticulum. It is involved in the control of mitotic chromosome transmission. It is required during cell division for faithful partitioning of the ER-nuclear envelope membranes which enclose the duplicated chromosomes in yeast. SCP160 contains seven K-homology (KH) RNA-binding domains. The model corresponds to the fifth one.
Statistics
?
PSSM-Id: 411878
Aligned: 13 rows
Threshold Bit Score: 101.971
Created: 19-Aug-2020
Updated: 25-Oct-2021
Structure
?
Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                     # ### #####  ##  ##              ####                               
1173344       859 SDFVTEVLKIDhKYHKSIVGSGGHILREIISkagg----eeirNKSVDIPNad--sENKDITVQGpQKFVKKVVEEINKI 932  Saccharomyces...
TIA96239     2236 AQQIINITDIDgKYHKSIIGQGGSKLRELIEkaggpa-dnqsqSGMVQFPKpn--sESQTIVIKAeKSLAGAIETEIRGF 2312 Wallemia icht...
XP_018227377  912 QDQVTRTIYVNrKHHRTLIGPGGSTLRNIITecgaig-drsqlAKIIQFPKpe--kKSDEIVIAGnKELVDKIIEKINFM 988  Pneumocystis ...
BAK07291      961 DSTVTRTIDVEkKHHRNIIGGGGANIRNIVVkaggtd-drqklARMVRFPRae--aEGNIIYVEAnQAIADKIIEAIQAQ 1037 domesticated ...
XP_011394885  937 EDTVVKTIEVDrKYHRSLIGAGGSTIRDIVVkaggsd-drreiARAVQFPKqd--nSDNTIKIEGrTSVVDNIIQQIEAI 1013 Neurospora cr...
EDK45305      932 ENFVVETVKVDpKYHRDLVGPYGSVMKHIITqaggdnlprqkyNRLMSIPNeg--sGSDEVVCQGdKAIVEKIVQAIEKI 1009 Lodderomyces ...
O59810        965 KNLVEKVIKIDrEYHRYLIGPNGSKLQNTIKecggst-dktetARLISFSNgnseeERNSVVLRGdKEIVEALETRLLEI 1043 Schizosacchar...
OEJ84346      911 DDFVIEKMVVDpKHFKYIIGQSGSNLREIMSktgad--mlvdgPRPINIPNvn-dgPEEPVVIQGpKKIVDKIVSEISKI 987  Hanseniaspora...
RKP29997      861 ENTITRTLKVDhKYMRDIVGQNGSTLRDLINkaggdslprqqyAKLVAIPSnn--sESDEIFFKGdKTIVEKLIKGVEAL 938  Metschnikowia...
CCX12878      572 SQPITRTITVPhRYHGQLIGSSGTTLQKLIGdaggpv-rkseqSQIVNFPGrd--sNSNSVVIRGnKTMVEEIIKGIKAK 648  Pyronema omph...
GEM08026      975 QDELRIEIDIPrEYHTTLIGSGGSSIRDLIArcggpt-darasGNTVRFPRqg--dAKDTVVITApTSVANKIKAALESE 1051 Rhodotorula t...
RPD74322      890 AEEITATVDVPsRFHRTIIGSGGQGLKELIArcggpt-dskaqAGLIRFPRqg--ePSDEVRLRGePKLVAKLQAELEKV 966  Lentinus tigr...
EDP44173      744 ESEAELHVTVPsAFHRHMIGPGGQRLHELIEraggps-dpkshTQMVRFPRt----NSDQVLVRApKDLAAKIAAVLESE 818  Malassezia gl...
Feature 1            
1173344       933 VKD 935  Saccharomyces cerevisiae S288C
TIA96239     2313 VAD 2315 Wallemia ichthyophaga
XP_018227377  989 VKE 991  Pneumocystis carinii B80
BAK07291     1038 VSE 1040 domesticated barley
XP_011394885 1014 VAE 1016 Neurospora crassa OR74A
EDK45305     1010 VEE 1012 Lodderomyces elongisporus NRRL YB-4239
O59810       1044 VEE 1046 Schizosaccharomyces pombe 972h-
OEJ84346      988 VEN 990  Hanseniaspora osmophila
RKP29997      939 VAE 941  Metschnikowia bicuspidata
CCX12878      649 VES 651  Pyronema omphalodes CBS 100304
GEM08026     1052 VDS 1054 Rhodotorula toruloides
RPD74322      967 VAD 969  Lentinus tigrinus ALCF2SS1-7
EDP44173      819 AQF 821  Malassezia globosa CBS 7966

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap