2ANR,2ANN


Conserved Protein Domain Family
KH-I_NOVA_rpt2

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cd22436: KH-I_NOVA_rpt2 
second type I K homology (KH) RNA-binding domain found in the family of neuro-oncological ventral antigen (Nova)
The family includes two related neuronal RNA-binding proteins, Nova-1 and Nova-2. Nova-1, also called onconeural ventral antigen 1, or paraneoplastic Ri antigen, or ventral neuron-specific protein 1, may regulate RNA splicing or metabolism in a specific subset of developing neurons. It interacts with RNA containing repeats of the YCAY sequence. It is a brain-enriched splicing factor regulating neuronal alternative splicing. Nova-1 is involved in neurological disorders and carcinogenesis. Nova-2, also called astrocytic NOVA1-like RNA-binding protein, is a neuronal RNA-binding protein expressed in a broader central nervous system (CNS) distribution than Nova-1. It functions in neuronal RNA metabolism. NOVA family proteins contain three K-homology (KH) RNA-binding domains. The model corresponds to the second one.
Statistics
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PSSM-Id: 411864
Aligned: 26 rows
Threshold Bit Score: 88.4457
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putativeGXXG motif
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens NOVA-1 (2ANR) binds RNA hairpin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    ### #####  ##         ### ###          #                       
2ANR_A        104 NQVKIIVPNSTAGLIIGKGGATVKAIXEQSGAWVQLSQKPDgi---nLQNRVVTVSGe-pEQNRKAVELIIQKI 173  human
EDO35692      137 KQMKIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAes---vAGERIVCVGGs--QEQVTAACVIITSK 205  starlet sea anemone
CEL99488      466 PTLRLLLPSMVFPHLIGRSGSQVQSIQRLSGASIQKGEQREs----sTDERILTITGp-pLARAKACQIVYEML 534  Vitrella brassicafo...
EDV22924      113 RQLKMIVPNAAAGVIIGKGGSNIKEIQDKSGAHVQVSQKKAqy---aIDERILTVTGe-fNERLTAWELIIWKC 182  Trichoplax adhaerens
GAX74355      163 TVLKLLFTNSAAGVVIGQGGRSRDLIQRKSGVRMQFSKPGEyf--egTSERILVLIGs-fHSIMLAMSIILRML 233  Chlamydomonas eustigma
Q9GRY9        134 AEIKIVMPNTSAGMVIGKSGANIKDIREQFGCQIQVYPKAGsveaktSLERVVTVAHdeaSALLQAASRVLEKV 207  Caenorhabditis elegans
ELT99335      139 KQMKILVPNSTAGMVIGKGGAFIRQIKDDSGAYVQVSQKSKdm---sLPERCVTIAGd-tEQNREAIDLVLEKI 208  Capitella teleta
XP_013393521  130 KQVKILVPNSTAGMIIGKGGVYIRQIKEESGAYVQISQKSKem---nLPERCITVAGe-aDNDKAAVKMILQKI 199  Lingula anatina
EEC08895      144 KQVKILVPNSTAGMIIGKGGSYIKQIKEESGAYVQISQKSKdh---aLAERCITVIGe-lENNKKACHMILAKI 213  black-legged tick
KOF93228      146 LFVKILVPNSTAGMIIGKGGIYIKQIKEESGAYVQISQKSKet---nLPERCVTVAGd-vESNRRAVDMILQKI 215  Octopus bimaculoides

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