2CPQ,2FMR


Conserved Protein Domain Family
KH_I_FMR1_FXR_rpt2

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cd22426: KH_I_FMR1_FXR_rpt2 
second type I K homology (KH) RNA-binding domain found in a family of fragile X mental retardation protein (FMR1) and fragile X related (FXR) proteins
The FMR1/FXR family includes FMR1 (also known as FMRP) and its two homologues, fragile X related 1 (FXR1) and 2 (FXR2). They are involved in translational regulation, particularly in neuronal cells and play an important role in the regulation of glutamate-mediated neuronal activity and plasticity. Each of these three proteins can form heteromers with the others, and each can also form homomers. Lack of expression of FMR1 results in mental retardation and macroorchidism. FXR1 and FXR2 may play important roles in the function of FMR1 and in the pathogenesis of the Fragile X Mental Retardation Syndrome. Members of this family contain three K-homology (KH) RNA-binding domains. The model corresponds to the second one.
Statistics
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PSSM-Id: 411854
Aligned: 31 rows
Threshold Bit Score: 64.4748
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putativeGXXG motif
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # ### #####  ##  ##     ####                              
2CPQ_A        14 AFHEEFVVReDLMGLAIGTHGSNIQQARKVpGVTAIELDed----tGTFRIYGEs-aDAVKKARGFLE 76 
KJE92003     250 GIHDQFTVPrDVLGFVIGKEGSNIAQASLIpGVSSIDVNke----tGVVSIIASs-tEAIEEARSLLN 312 Capsaspora owczarzaki ATCC ...
XP_019858336 228 LYEDKFHIFpECIGFAMGRQGWNVNQARQIpGIISIDFDdf----gSVFTVRAEt-kEAAMEARSLLE 290 Amphimedon queenslandica
CEO97373     223 GHVEEFTVDlSTIGYAIGAKGSRVQRVQQMpGIMNVQIDae----tGKIRILAEs-pQAAAAARHELE 285 Plasmodiophora brassicae
XP_005819663 219 YACVSFQVDpRYLGLVIGPQGRNLKPAKEIqGIQSIDVYa-----nGLVNIYGDn-qNVVEEARKELE 280 Guillardia theta CCMP2712
KAA8494304   331 ACTLVFEVSsDMIGSCIGKNGTNLKAAQRIpGVIRIRVDddlpraiHRVEILATs-nEAAEKARDMID 397 Porphyridium purpureum
XP_005830473 225 GFQLPFRVDpDKLKMVIGAKGANIRKAKSLpGIHHIEARp-----dGVVTVWAEk-rEEAEAARELLE 286 Guillardia theta CCMP2712
ETO25331     163 CHKLEFEFDkSLTKHVIGSKRSYVSKAEQLgGVRHVSVTd------GHCAIFADt-iEAAEAARELLE 223 Reticulomyxa filosa
XP_011130321 725 TIRLVISINgDRVPMLIGRGGSTIQQIRRIpGVQSIEVPndv-dpdSTVEIVLVgrtAALEEAEAFIE 791 Gregarina niphandrodes
XP_024378842 703 PLITMFKVDsDKISIVVGPGGKTIRGIIESsGVEAVDVTd-----dGSVRIVGRs-pQGVEAAKAKIQ 764 Physcomitrella patens

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