4OVA


Conserved Protein Domain Family
KH_I_FMR1_FXR_rpt1

?
cd22425: KH_I_FMR1_FXR_rpt1 
Click on image for an interactive view with Cn3D
first type I K homology (KH) RNA-binding domain found in a family of fragile X mental retardation protein (FMR1) and fragile X related (FXR) proteins
The FMR1/FXR family includes FMR1 (also known as FMRP) and its two homologues, fragile X related 1 (FXR1) and 2 (FXR2). They are involved in translational regulation, particularly in neuronal cells and play an important role in the regulation of glutamate-mediated neuronal activity and plasticity. Each of these three proteins can form heteromers with the others, and each can also form homomers. Lack of expression of FMR1 results in mental retardation and macroorchidism. FXR1 and FXR2 may play important roles in the function of FMR1 and in the pathogenesis of the Fragile X Mental Retardation Syndrome. Members of this family contain three K-homology (KH) RNA-binding domains. The model corresponds to the first one.
Statistics
?
PSSM-Id: 411853
Aligned: 28 rows
Threshold Bit Score: 93.443
Created: 23-Apr-2019
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4OVA_A       123 KDTFHKIKLDVPEDLRQMCake-----aaHKDFKKAVGa-FSVTYDPENYQLVILSInEVTSKRAHMLIDMHFRSLRTKL 196 human
VDK51714     151 KSQFKHSKIVVPDDLRSYFqrp-----eiHSDFATTVKn-VFVEYEEDTGNLLLSTFeEQAIKRASVLSEMYFKDSRQKM 224 herring worm
XP_009012833 125 SQSIHKHVIQVPSDLSSLCqdm-----nnHREFKQKIGa-SCVQYNKKSNSLIVLSSdESIIKKAILLSDMHVKSLKQKF 198 Helobdella robusta
XP_019858342 128 AIQFYQKEFTVPDDIQDYCqea-----kvHNNFRSKVGa-ISVTYNTDKKSLVVICDnQASLEKAELLIDMHLSDMSTQA 201 Amphimedon quee...
KRX90105      93 ANSFRTTKIAVPPALNEYSmrp-----daHADFARHVGr-ILVNYDPQSKQLIVTSCyDDAIERAEMLAEMHFRLLSQKL 166 Trichinella pse...
RMX59372      90 EFYVIHSTTVGAMHFQISCkde-----mtHREFKKQCGa-SCVYYLDELAVLVALSRsERPVKCAAMLSEIHFRSLRTKM 163 Pocillopora dam...
VDO95487      62 TTMECNRDVVSVDKVRPVNrnppslrqdaHQGFVKFIPn-ILVDYDKTTNELVVTSCyDVAINRAQLLSEIYMRNLRQKV 140 Soboliphyme bat...
VUZ55289     181 PENIFTHSIAIPQDLLPYAsdl-----saHQSILRHCG--EPASLYIEKNHLVVISPsREVIHVVELLEDMHIRMLRQKC 253 Hymenolepis dim...
TKR81127     119 KEMVKQVRVLVPDDLKKYFtrp-----nsYNDYAESITn-IGVDYDAQAAELVITSFsQQHIKRAQILKDMYFADSRSKM 192 Steinernema car...
VDQ01261     133 PDDIHRHRIEIPKELAEFAsdt-----svHNYFLRRCGgpVSVYYDSESSSLVVLTTdPVTAKNVALLEDTHLRMLRQKF 207 Trichobilharzia...
4OVA_A       197 SLI 199 human
VDK51714     225 QLL 227 herring worm
XP_009012833 199 ALV 201 Helobdella robusta
XP_019858342 202 SLR 204 Amphimedon queenslandica
KRX90105     167 SLK 169 Trichinella pseudospiralis
RMX59372     164 LLQ 166 Pocillopora damicornis
VDO95487     141 VLL 143 Soboliphyme baturini
VUZ55289     254 NII 256 Hymenolepis diminuta
TKR81127     193 QLI 195 Steinernema carpocapsae
VDQ01261     208 ALT 210 Trichobilharzia regenti
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap