Conserved Protein Domain Family
KH-I_Vigilin_rpt12

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cd22415: KH-I_Vigilin_rpt12 
twelfth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
Vigilin, also called high density lipoprotein-binding protein, or HDL-binding protein, is a ubiquitous and highly conserved RNA-binding protein that shuttles between nucleus and cytoplasm presumably in contact with RNA molecules. It may be involved in chromosome partitioning at mitosis, facilitating translation and tRNA transport, and control of mRNA metabolism, including estrogen-mediated stabilization of vitellogenin mRNA. Vigilin is up-regulated by cholesterol loading of cells and functions to protect cells from over-accumulation of cholesterol. It may play a role in cell sterol metabolism. Disruption of human vigilin impairs chromosome condensation and segregation. Vigilin has a unique structure of 14-15 consecutively arranged, but non-identical K-homology (KH) domains which apparently mediate RNA-protein binding. The model corresponds to the twelfth one.
Statistics
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PSSM-Id: 411843
Aligned: 21 rows
Threshold Bit Score: 118.556
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ### #####  ##  ##    ####                                             
Q00341        875 TLECAIPQKFHRSVMGPKGSRIQQITRDFSVQIKFPDReenavhstepvvqengd---------eagegreakdcdpgsp 945  human
NP_958882     878 TMECVIPQKFHRSIMGPKGSRIQQITKDHNVQIKFPDReeqqqadasvqenge-------------angevkepvdptap 944  zebrafish
EDO37476      774 TIECVIPQEFHRNIMGAKGANVQEVTARHKVQIKFPDRspageepvvngdg------------------ehldpeapisp 835  starlet sea a...
XP_013393956  870 TIECVIPQQYHRTVMGTKGSRVQEVTKDHNVGIKFPDRpqangagdgkgnakpqvngdvdvngdthvdgagdaehdqdkp 949  Lingula anatina
XP_019852137  866 TVECSIPHKKHRSILGPKGSNVQAVTQEYNVTIKFPDKqqqqhqqqdgdk--------------------ddeggmasds 925  Amphimedon qu...
NP_725786     890 TIEVVIPQRHHRTIMGARGFKVQQVTFEFDVQIKFPDRdatepvegltnggsgengge---negqegeqevekeaeqepv 966  fruit fly
XP_007910050  874 TIECVINQRFHRMVMGAKGLKVQQITKDHLVQIKFPEReenpgpelqhvheng--------------etngevkvdptvp 939  elephant shark
AFX64992       31 TIECIIPEKYHRTVIGTKGANVQTITSEHDVQIKFPDRqqqqreaae-------------------------epeekvqs 85   Botryllus sch...
EEC13290      886 TLEVVIPQQHHRALMGTKGHKVQRINQDFNVHVKFPEResrdreplengeaav-------------ngevaevapeegkv 952  black-legged ...
PVD35312      868 TVECVIPQQYHRTIMGAGGSRVREVTRVHEVGIKFPDKpvangkkaeeeedavt------------ngdvnnlqgsnkla 935  Pomacea canal...
Feature 1                                  
Q00341        946 rRCDIIIISGRKEKCEAAKEALEAL 970  human
NP_958882     945 kKCDVIVLSGRKERCEAAVEALKAL 969  zebrafish
EDO37476      836 rKRDIIIITGKKESAEAAKIDLLDL 860  starlet sea anemone
XP_013393956  950 kKQDIILITGKKEDCEAAKEALMAL 974  Lingula anatina
XP_019852137  926 dPRDIILISGRQENCDNAKKALLDL 950  Amphimedon queenslandica
NP_725786     967 rQCDVIRITGRIEKCEAAKQALLDL 991  fruit fly
XP_007910050  940 kKNDIIIISGRKERCEAARDALLAL 964  elephant shark
AFX64992       86 eKSDIIYITGNKHKCEAAKKALLES 110  Botryllus schlosseri
EEC13290      953 rKEDLILIKGKQEDCEHAREALLAL 977  black-legged tick
PVD35312      936 gKSDIIIITGKPENCERARQALLDL 960  Pomacea canaliculata

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