2CTJ


Conserved Protein Domain Family
KH-I_Vigilin_rpt9

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cd22412: KH-I_Vigilin_rpt9 
ninth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
Vigilin, also called high density lipoprotein-binding protein, or HDL-binding protein, is a ubiquitous and highly conserved RNA-binding protein that shuttles between nucleus and cytoplasm presumably in contact with RNA molecules. It may be involved in chromosome partitioning at mitosis, facilitating translation and tRNA transport, and control of mRNA metabolism, including estrogen-mediated stabilization of vitellogenin mRNA. Vigilin is up-regulated by cholesterol loading of cells and functions to protect cells from over-accumulation of cholesterol. It may play a role in cell sterol metabolism. Disruption of human vigilin impairs chromosome condensation and segregation. Vigilin has a unique structure of 14-15 consecutively arranged, but non-identical K-homology (KH) domains which apparently mediate RNA-protein binding. The model corresponds to the ninth one.
Statistics
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PSSM-Id: 411840
Aligned: 21 rows
Threshold Bit Score: 108.921
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putativeGXXG motif
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   # ### #####  ##  ##      ####                                
2CTJ_A         16 IAEVEVSIPaKLHNSLIGTKGRLIRSIMEECGG-VHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85   human
CAB52798      668 IVTEEVQIPpKYYNSIIGTGGKLISSIMEECGG-VSIKFPNSDSKSDKVTIRGPKDDVEKAKVQLLELANE 737  fruit fly
EDV24343      628 VEEITVSIPqKYHNRLIGSKGKLIRSISNDCGG-VIIKIPDGKTTSDKIVIRGPKDDIKNAKAMLLEIANE 697  Trichoplax adhaerens
XP_027228315  663 IVELDIIIPaKFHNSMIGAGGKLIQSISEECGG-VAIKFPPPESRSDKVTIRGPKEEVHKAKQMLVELSNE 732  Streptococcus pneumoniae
XP_019852137  643 VVDVTIKIPhKQHNAIIGPRGKLIRSIMEECGG-IRIQFPSSDSTSDEVQLHGPKEDVNKAKAMLLEMAAQ 712  Amphimedon queenslandica
XP_013097099  645 IKEIIIDIPnKLHNSLIGTKGRFIRSIMEDCGG-VMIRFPQEGTKSDKVVIRGPSADVENAKQQLLELANE 714  Biomphalaria glabrata
XP_026691860  669 IVEESVTINpQLHNQLIGAKGRLVRSLMDDYGGnVQIHFPMGSSGSDKVTIRGPKEEVEKAKDQLMQIAKQ 739  vase tunicate
NP_496136     636 VAEESIEIPqKVQSRFFGNGRRLISDIEDECGG-VHIRFPSEKSESTKVTIRGPAGDVAKAVGLLSALAKD 705  Caenorhabditis elegans
PIK60789      650 IVEEEVNIPsKHHQSIIGPKGTLIKSIVEECGG-VMIHFPPGKDNADKVRIRGVKEEVDKAKKQLLDLASQ 719  Japanese sea cucumber
EEC13290      664 VVEVSIMIPcNLHNSIIGAKGRLIHSIMEDCGR-VQITFPQQDSKSDRVTLSGPKEDVDRAKKQLLDLSNE 733  black-legged tick

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