Conserved Protein Domain Family
KH-I_Vigilin_rpt8

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cd22411: KH-I_Vigilin_rpt8 
eighth type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
Vigilin, also called high density lipoprotein-binding protein, or HDL-binding protein, is a ubiquitous and highly conserved RNA-binding protein that shuttles between nucleus and cytoplasm presumably in contact with RNA molecules. It may be involved in chromosome partitioning at mitosis, facilitating translation and tRNA transport, and control of mRNA metabolism, including estrogen-mediated stabilization of vitellogenin mRNA. Vigilin is up-regulated by cholesterol loading of cells and functions to protect cells from over-accumulation of cholesterol. It may play a role in cell sterol metabolism. Disruption of human vigilin impairs chromosome condensation and segregation. Vigilin has a unique structure of 14-15 consecutively arranged, but non-identical K-homology (KH) domains which apparently mediate RNA-protein binding. The model corresponds to the eighth one.
Statistics
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PSSM-Id: 411839
Aligned: 26 rows
Threshold Bit Score: 70.3098
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 # ### #####  ##  ##    ####                              
Q00341        583 SISVPIFKQFHKNIIGKGGANIKKIREESNTKIDLPaen--snsETIIITGK-RANCEAARSRIL 644  human
XP_019852137  573 KSEVKIFKKFHGSIIGRGGATLKRIREETNTKIDMPkeg--sdsDVILITGR-KENVEKAKRQLQ 634  Amphimedon queenslandica
XP_006818023  477 KVEIPIFKKFHKNIIGKGGATISKIKDETDTRIEIPsed--sdsDVIIIIGK-KPQVELARDKIQ 538  Saccoglossus kowalevskii
PIK60789      580 EEQIPIMKQLHKNIIGRGGATINKIKDETDTRIEIPten--sssNMITVTGR-KENVQKAKSKIL 641  Japanese sea cucumber
Q17832        566 QQTVAIFKEFLKHIVGKGGASIRKLRDETETRIDLPesg--sddGKITVTGK-QANVEKAVAQLN 627  Caenorhabditis elegans
EAL63032       79 SKTINVDKELHKYIIGTKGSTIKQIKEDTNCDVEIPen-----gETITVRGSsDSDCQRAIDMIN 138  Dictyostelium discoideum AX4
PAA72925      567 EEKVRIGKAYHKDIIGRKGQTIAKIREETNTRIIMPdsg--sqsDVITVVGK-QKDVQKAVRQIN 628  Macrostomum lignano
Q54FA7        187 TILLPIPKVHHGKIIGRGGKNLKELRELTNTQIQLPesn--vtdNKITIKGR-KDDVEKARQMIL 248  Dictyostelium discoideum AX4
XP_026690921  148 MIKIAIRKNDCGKLIGRGGSTINDIRDKSNTNIKVCqddeynyeVPVEITGT-SEDCKLAKKLIQ 211  vase tunicate
RWS09730       72 LLTVEVPKCFRGLIFGSKGQTKNRITSNTNTNIEIPren---qdGPLRIYGSsERDLRAARKRIL 133  Dinothrombium tinctorium

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