Conserved Protein Domain Family
KH-I_Vigilin_rpt7

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cd22410: KH-I_Vigilin_rpt7 
seventh type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
Vigilin, also called high density lipoprotein-binding protein, or HDL-binding protein, is a ubiquitous and highly conserved RNA-binding protein that shuttles between nucleus and cytoplasm presumably in contact with RNA molecules. It may be involved in chromosome partitioning at mitosis, facilitating translation and tRNA transport, and control of mRNA metabolism, including estrogen-mediated stabilization of vitellogenin mRNA. Vigilin is up-regulated by cholesterol loading of cells and functions to protect cells from over-accumulation of cholesterol. It may play a role in cell sterol metabolism. Disruption of human vigilin impairs chromosome condensation and segregation. Vigilin has a unique structure of 14-15 consecutively arranged, but non-identical K-homology (KH) domains which apparently mediate RNA-protein binding. The model corresponds to the seventh one.
Statistics
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PSSM-Id: 411838
Aligned: 23 rows
Threshold Bit Score: 100.813
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   # ### #####  ##  ##     ####                             
Q00341        507 ERTKDLIIEQRFHRTIIGQKGERIREIRDkFPEVIINFPDpAQKSDIVQLRGPKNEVEKCTKYMQKM 573  human
NP_958882     510 ERTKDMIIEQRFHRAIIGQKGEKIKEIRDkFPEVIINFPDpAQKSDIVQLRGPRTEVEKCSKFMQKM 576  zebrafish
XP_006000402  506 ERTKDLIIEQRFHRTIIGQKGEKIKEIRDkFPEVIINFPDpVQKSEIVQLRGPKNEVEKCAKFMQKM 572  coelacanth
XP_007910050  506 ERTKDLIIEHRFHRTIIGQKGEKVKEIRDkFPEVIINFPDpAQKNDVVQLRGPKNEVEKCAKFLQKV 572  elephant shark
2829705       506 ERTKDLIIEQKFHRTIIGQKGERIREIREkFPEVIINFPDpAHKSDIVQLRGPKNEVEKCTKYMQKM 572  chicken
PAA78241      502 ERSKDLIIEHQFHRALIGQGGAKIAEIRDkYPDVLIKFPNaDQNSDVVQLRGPRDQLANVEKLLKKA 568  Macrostomum lignano
EDV24343      482 ERVKDLVFEQKFHRRIIGSKGSNIREISAaYPEISINFPDpQSDSDVVQVRGPKDDVDKVCSKLKKI 548  Trichoplax adhaerens
CAB52798      522 EKSKDVIIDRRLHRSIIGAKGEKIREVKDrYRQVTITIPTpQENTDIVKLRGPKEDVDKCHKDLLKL 588  fruit fly
EEC13290      518 EVTRELTVEPRFHRYLIGAKGEAIQEVRRqFNQVNVTFPEaGARSDKVLIRGPREDVEACHRHLAQT 584  black-legged tick
CBY11624      505 EATGKITLKRRFHRQIIGQGGENIKKLRDqFPNVNISIPDeNSKSDEISIRGPSKELAAAKEVLSKM 571  Oikopleura dioica

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