Conserved Protein Domain Family
KH-I_Vigilin_rpt3

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cd22407: KH-I_Vigilin_rpt3 
third type I K homology (KH) RNA-binding domain found in vigilin and similar proteins
Vigilin, also called high density lipoprotein-binding protein, or HDL-binding protein, is a ubiquitous and highly conserved RNA-binding protein that shuttles between nucleus and cytoplasm presumably in contact with RNA molecules. It may be involved in chromosome partitioning at mitosis, facilitating translation and tRNA transport, and control of mRNA metabolism, including estrogen-mediated stabilization of vitellogenin mRNA. Vigilin is up-regulated by cholesterol loading of cells and functions to protect cells from over-accumulation of cholesterol. It may play a role in cell sterol metabolism. Disruption of human vigilin impairs chromosome condensation and segregation. Vigilin has a unique structure of 14-15 consecutively arranged, but non-identical K-homology (KH) domains which apparently mediate RNA-protein binding. The model corresponds to the third one.
Statistics
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PSSM-Id: 411835
Aligned: 29 rows
Threshold Bit Score: 66.4633
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putativeGXXG motif
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  # ### ####   ##  ##       ####                                         
Q00341        224 VERLEVEKaFHPFIAGPYNr-LVGEIMQe---TGTRINIPPps---------------------vnRTEIVFTGEK---E 275  human
XP_027228315  235 YEKLEIPKqYHPFICGANNe-KINTMMTe---HNVRINVPPps---------------------vmKNEMTIAGEK---E 286  Streptococcus...
EFX88840      219 YERLEIPKvFHPFITGAHNe-KIKAFTEg---SGVKVNIPPls---------------------vqKDEISIAGER---D 270  common water ...
NP_496136     209 TEHIVCPKnLVAFVRGPKNe-TYDRLTQn---NGVKINIPPph---------------------vtNEVISVTGEK---D 260  Caenorhabditi...
XP_011394885  292 TKLRNIPAeFYPFIAGPKNn-LVHKLEEd---MGVQIRVPPlqgrslqppsipapgqrpifapapqDYNIQLAGER---T 364  Neurospora cr...
ORZ35032      367 LSTRTVPTtLYPFLIGANGs-KVAELEAt---YDVKIAIPPpaylqae-----------ratpsrhAELIVIKGEE---A 428  Catenaria ang...
TPX42483      282 VEKVYIDRvYQPFVAGPSNs-NFDNLQTe---FGVRIHMAPilaheksgel-----kkdkdgkvnnPHEIVIVGER---E 349  Synchytrium e...
OCF38113      280 TSIKTIPSsYYPFIAGPKGv-KARQLEEevggGEVKIHVPPpavwkalekqaqgdgedvdaivkdrDLSIKVKGEK---E 355  Kwoniella hev...
OON09820      262 TSRVKIERsFHQFIAGPGGc-AVATLQEq---YGIKIHIAPpdvvs---------------sqnndINDIILVGER---S 319  Batrachochytr...
EPY75628      217 MERLDVGKaFHPFTAGPYNktSDKSLQE----MGADIHISPss---------------------anQTQISFPGKKqqpD 271  Wild Bactrian...
Feature 1                   
Q00341        276 QLAQAVARIK 285  human
XP_027228315  287 GVLKCKDIIQ 296  Streptococcus pneumoniae
EFX88840      271 GVLKVKLAII 280  common water flea
NP_496136     261 GVLRVAAEIR 270  Caenorhabditis elegans
XP_011394885  365 AVQNARAAIE 374  Neurospora crassa OR74A
ORZ35032      429 NVLQAVAAIK 438  Catenaria anguillulae PL171
TPX42483      350 AVKQVEDKLK 359  Synchytrium endobioticum
OCF38113      356 KVNEVVANIL 365  Kwoniella heveanensis BCC8398
OON09820      320 SVLLVLAKIN 329  Batrachochytrium salamandrivorans
EPY75628      272 QIQDCVKKIS 281  Wild Bactrian camel

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