2N8M,6ROL


Conserved Protein Domain Family
KH-I_IGF2BP_rpt4

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cd22403: KH-I_IGF2BP_rpt4 
fourth type I K homology (KH) RNA-binding domain found in the insulin-like growth factor 2 mRNA-binding protein (IGF2BP) family
The IGF2BP family includes three members: IGF2BP1/IMP-1/CRD-BP/VICKZ1, IGF2BP2/IMP-2/VICKZ2, and IGF2BP3/IMP-3/VICKZ3, which are RNA-binding factors that recruit target transcripts to cytoplasmic protein-RNA complexes (mRNPs). They function by binding to the 5' UTR of the insulin-like growth factor 2 (IGF2) mRNA and regulating IGF2 translation. IGF2BP proteins contain four K-homology (KH) RNA-binding domains which are important in RNA binding and are known to be involved in RNA synthesis and metabolism. The model corresponds to the fourth one.
Statistics
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PSSM-Id: 411831
Aligned: 20 rows
Threshold Bit Score: 69.1911
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA bindingGXXG motif
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   ## #####  #          #######                                         
2N8M_A       106 ETHIRVPASAAGRVIGKGGKTVNELQNltaAEVVVPRDQtpd---------------------eneQVIVKIIGhfYASQ 164 chicken
XP_027235266 474 TVEIIVPSSQVGRIIGKGGQNVRDLQRqtgSVIKLPQQGttt----------------------seETTVHILGpfFSVQ 531 Streptococcus p...
EFX66153     315 TVELLVASSQVGRIIGKGGQNVREMQRttsSVIKLPEQGast----------------------geETTVHIIGnfFAVQ 372 common water flea
CBY32688     492 TTQITIPGKLVGRIIGKGGVNVRELQRitsSEVTIPRQGeln---------------------tseEIPVSITGtfFSNQ 550 Oikopleura dioica
XP_002737239 532 ISEIMVPANMVGRIIGKRGSAIQDLELltgAEIDVPKNIkpn---------------------dknEVVVRIKGhfFASQ 590 Saccoglossus ko...
XP_002157937 472 KTEFIVPGSCVGRVIGKKGQVVQDIQDkaqADIEVPKDKqg-----------------------anDVPVYITGtfNGTQ 528 Hydra vulgaris
XP_030829867 524 RSEIAVPSQLVGRIIGKRGQRVRELQRvtgARVEVPRRRgdgagdegsgtpepptesnnqngnnsgDVVVKLEGhfYANQ 603 purple sea urchin
EEC13407     521 RVEIFVPSNQVGRIIGKGGQTVRELQRltrALIKLPDESqna---------------------nseETPVHILGefFSSQ 579 black-legged tick
Q7PZV0       360 TVEIFVPSAQVGRIIGKGGQNVRELQRvtgSIIKLPEHTasap--------------------vdeETTVHIIGpfFSVQ 419 Anopheles gambi...
XP_002600650 533 RAEIPVPSNMVGRIIGKRGASVQGLQKntsARIEVPRNKqgd---------------------engEVPVTIVGnfYSVQ 591 Florida lancelet
Feature 1               
2N8M_A       165 MAQRKIR 171 chicken
XP_027235266 532 SAQRRIR 538 Streptococcus pneumoniae
EFX66153     373 SAQRRIR 379 common water flea
CBY32688     551 SAQRKIR 557 Oikopleura dioica
XP_002737239 591 SAQRQIR 597 Saccoglossus kowalevskii
XP_002157937 529 IAISRIR 535 Hydra vulgaris
XP_030829867 604 AAQRRIR 610 purple sea urchin
EEC13407     580 AAQRQIR 586 black-legged tick
Q7PZV0       420 SAQRRIR 426 Anopheles gambiae str. PEST
XP_002600650 592 SAQRQIR 598 Florida lancelet

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