2N8L,6ROL


Conserved Protein Domain Family
KH-I_IGF2BP_rpt3

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cd22402: KH-I_IGF2BP_rpt3 
third type I K homology (KH) RNA-binding domain found in the insulin-like growth factor 2 mRNA-binding protein (IGF2BP) family
The IGF2BP family includes three members: IGF2BP1/IMP-1/ CRD-BP/ VICKZ1, IGF2BP2/IMP-2/ VICKZ2, and IGF2BP3/IMP-3/VICKZ3, which are RNA-binding factors that recruit target transcripts to cytoplasmic protein-RNA complexes (mRNPs). They function by binding to the 5' UTR of the insulin-like growth factor 2 (IGF2) mRNA and regulating IGF2 translation. IGF2BP proteins contain four K-homology (KH) RNA-binding domains which are important in RNA binding and are known to be involved in RNA synthesis and metabolism. The model corresponds to the third one.
Statistics
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PSSM-Id: 411830
Aligned: 18 rows
Threshold Bit Score: 90.3877
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RNA bindingGXXG motif
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:RNA binding site [nucleic acid binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   ### #####  ##         #####                  #                    
2N8L_A        23 ETVHVFIPaQAVGAIIGKKGqHIKQLSRFASASIKIAPpet----------pdsKVRMVVITGP-PEAQFKAQGRIY 88  chicken
XP_002127946 420 ETCTLYIPaESVGAMIGSKGsHIRNISRIANASIKIVPpedg---------ddeKQRRVTIMGS-PEGQWKSQFCIF 486 vase tunicate
XP_002737239 450 EITYLFIPiSAVGAIIGVKGqEIREISQKSSAKVRVEPprs----------eddEERAVYIEGY-PDAQWIAQWFIY 515 Saccoglossus kowal...
XP_023931508 547 ETTYLYIPsTAVGAIIGTGGqHINYVKNVSGAGIKVADkded---------pnaPERRVTITGN-YDAQYKAQLLLF 613 Lingula anatina
PIK50518     115 ETVHLYIPkESVGPIIGLSGeNIRISAKRANASIKISEaes----------etaTERQVVIKGT-PESQYKAQYDIF 180 Japanese sea cucumber
KOF99741     303 EVTYLYIPkRAVGSIIGSKGiNIQTIKRDSSARIKILPnnkgegdekkgsssnmDERKAIIVGD-LDAQWKAQFYLF 378 Octopus bimaculoides
XP_002157937 392 ETTCILIPtKEVGAIIGRNGgYISRMKQYSGAQIRVIKgd------------egGESKVEIVGP-PDCQWRASLCVF 455 Hydra vulgaris
RDD40433     383 ETTAIYIPiQTFNYVIGARGnQLPALEQISGASLQLVQsmy----------sgaNERKVVVNGN-ASSQWKAQLSIF 448 Trichoplax sp. H2
EEC13407     440 ELVYLYIPnVAVGAVIGTGGsSIRDMIMLSGASIKVGEvc------------rdEPTLPIVSGGvAVHCFQAQGMIF 504 black-legged tick
XP_002600650 449 EKSDLWVPgGVVGALIGPGGqNIRLASRQANATIKIAPadqs--------aqgqAERKVSITGS-PDAQWKVQYWVF 516 Florida lancelet

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