2E3U,1TUA


Conserved Protein Domain Family
KH-I_Dim2p_like_rpt1

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cd22389: KH-I_Dim2p_like_rpt1 
first type I K homology (KH) RNA-binding domain found in Pyrococcus horikoshii Dim2p and similar proteins
The family includes a group of conserved KH domain-containing protein mainly from archaea, such as Dim2p homologues from Pyrococcus horikoshii and Aeropyrum pernix. Dim2p acts as a preribosomal RNA processing factor that has been identified as an essential protein for the maturation of 40S ribosomal subunit in Saccharomyces cerevisiae. It is required for the cleavage at processing site A2 to generate the pre-20S rRNA and for the dimethylation of the 18S rRNA by 18S rRNA dimethyltransferase, Dim1p. Dim2p contains two K-homology (KH) RNA-binding domains. The model corresponds to the first one.
Statistics
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PSSM-Id: 411817
Aligned: 24 rows
Threshold Bit Score: 93.0323
Created: 17-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putativeGXXG motif
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:putative nucleic acid binding site [nucleic acid binding site]
Evidence:
  • Comment:flanked by the GXXG motif and a variable ssRNA/DNA binding loop
  • Comment:Based on the structure evidence that other KH-I superfamily members bind RNA/ssDNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # ### #####  ##  ##    ####                                     
2E3U_A        36 EYVKIPkDRIAVLIGKKGQTKKEIEKRtKTKITIDSetGEVWITStketedpLAVWKARDIVLAIGRGFSP 106 Pyrococcus horikoshii OT3
AMQ19486      40 EFVKIPkERIAVLIGKKGQTKKEIERRtKTKIEVDSetGEVFITAteetedpLAVWKARDVVMAIGRGFSP 110 Thermococcus peptonophilus
ABK77414       5 KRVRIPsERIAVLIGRKGSSKAMIEQScGVSLKVDSetGEATVTCtda-ehaAGAFAASEVVSAIGRGFSP 74  Cenarchaeum symbiosum A
OQX50438       4 EFVRVPqDRVGTIIGKKGKTKEEIEKNlNVDIVIKD--GVVRISEknt-edpLAVWKAKDVIKAMARGFSP 71  Candidatus Cloacimonas s...
RZB33284       3 QYVMIPhERIGVLIGPQAAVKRAIEEKtGCELQISSstGTVEISHad----pLMALRTREIVLAIGRGFNP 69  Desulfobacteraceae bacte...
ABX13305       5 KLLRIPnDRIAVLIGKSGNIKSKIEKScHVSLDIDGetGEVLIKSdgd-vekIQPFKAMEIVTAIGRGFSP 74  Nitrosopumilus maritimus...
Q9HN69         2 KHVKIPtDRIGVLIGDGGETLRRIEAAaEVDIDVDSqdGAVAIERtg---dpVRGMQAPEIVQAIGRGFKP 69  Halobacterium salinarum
A0B5J6         1 MNIKIPsDRIGAVIGPNGETKRYLEERcSVSLDIDSesGAVTVTSqg---daLDAMRAIDVLRAIARGFSP 68  Methanothrix thermoaceto...
WP_011020937   3 QYVKIPkERIGVIIGPKGETKKFIEEKtTCQLEIESdsGKIDVTCed---dpLKEFRILETLKAIGRGFSP 70  Methanosarcina acetivorans
WP_010900825  11 DTVRVPkDRISIVIGKDGSTKKRIEENgEVKLTIDSneGEVSIDQmg---daIKSNTAKSVVQAIGRGFNP 78  Thermoplasma acidophilum

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