1W36,3K70,5LD2,6SJB


Conserved Protein Domain Family
RecC_C-like

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cd22353: RecC_C-like 
Click on image for an interactive view with Cn3D
C-terminal nuclease-like domain of exodeoxyribonuclease V subunit RecC and similar proteins
Exodeoxyribonuclease V subunit beta (RecC) is part of the RecBCD complex that processes DNA ends resulting from a double-strand break. Its C-terminal domain contacts the two separate strands of the DNA substrate and may be responsible for stabilizing RecD interactions with the complex. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Statistics
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PSSM-Id: 411757
Aligned: 107 rows
Threshold Bit Score: 178.503
Created: 30-Jun-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:DNA binding site [nucleic acid binding site]
Evidence:
  • Structure:1W36: Escherichia RecC C-terminal domain active site binds substrate DNA; contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               #      #                           ##  ##  #                              
1W36_C        833 PLETLQRFWAHPVRAFFQMRLQvNFRTEDSEIPDTEpFILEGLSRYQINQQLLNALVEQd--dAERLFRRFRAAGDLPYG 910  Escherichia coli
WP_017222465  841 ELAELSRFYRHPTKYFFNRRLKvYFNQASLDVLDDEpFDVDNLEKYHLKAQLLETELMGg--dINQVTDRLVASGSLPLG 918  Moritella das...
WP_153767389  810 EVTELLRFYRNPCQYFCNRRLKvFFEDYASQPEDTEpFEVDPLDSYQIRQSLTGLLLTEa--dVDEYSQRLNATGQLPHG 887  Endozoicomona...
WP_034834992  819 EVPELLRFFRNPSQYFCNRRLKvYFEQEDTLLSDTEpFSMGPLDTYWLKTSLLETLMAKs--sLDSFKEKLNATGTLPHG 896  Endozoicomona...
OQX37862      810 ELTELLRFYRNPCQYFCNRRLKvWFNEQDDMLDSDEpFSLNPLESYQLRESLLEDWLNSg--nTLQSESHSRASGTLPHG 887  Oceanospirill...
WP_011769835  848 PLEQLKQFLKHPCKVFFNQRLDvYFELDDDQQENDEpFSFNHLQQYVLKHEQFEYALEGk--sLDNLFIEKRAAGKLPFG 925  Psychromonas ...
WP_101746220  814 ELAELLRFYSNPSRYFFNRRLKvYFSVQDQALEETEtFAMEPLENYQLKAGILDSLINEe--aPERLLSRLHSSGKLPHS 891  Endozoicomona...
WP_141272071  842 ELEQLLSFWSLPVKYFFNQRLQvWFNSEKELIEDEEpFSLGGLQRYLLRDEIVSAMLDGggseVEQVAHYYRSSGQLPIG 921  Vibrio comitans
WP_067587913  812 ELTELLRFYTNPCRYFFNRRLKvYFSQQDLTLEETEtFAMDALENYQLKSVLLESMIVRe--pMELLIKRLQSTGELPHS 889  Endozoicomona...
WP_155161238  817 PLAQLLSFWNNPCQAFCQQRLKvFFDDDDDSAETREpFALGGLTGWQLKDSLVHKHLEGa--sETEFRHHARAAGVLPHG 894  Sansalvadorim...
Feature 1                                                                               ###       
1W36_C        911 AFGEIFWETQCQEMQQLADRVIAcrq-pgQSMEIDLACng-------vQITGWLPQVqp-----dGLLRWRPSllsvaQG 977  Escherichia coli
WP_017222465  919 RFGQISLDKEVSTVNQLAQVLMPlltnsnEDIEVDIPLvs-------gRLVGWLKQIyn-----gGLVRHKPSgfngkDY 986  Moritella das...
WP_153767389  888 AFGELLLDEQQQSVQPLASDVKShliasrDDIEVNLNIes-------iQLTGWLRQIyq-----sGPVRYRPArlkarDI 955  Endozoicomona...
WP_034834992  897 AFGELLLEDQQNAVSPLVEKLRDstlaplEDVEVNLSLag-------iKVTGWLKQHyafpgqnsGLLRYRAAklkarDK 969  Endozoicomona...
OQX37862      888 HFGQLTLDEQKESLKNLGDSLTDalreptEDLEINLTLns------giQLTGWLKQCtr-----nGLIRFRPSklkpkDY 956  Oceanospirill...
WP_011769835  926 EFAALIFTKDLEPMENLADLTTSyfigeiETINIDIQFae-------kRLFGELNDHce-----kGLVRVKTGnikgkDI 993  Psychromonas ...
WP_101746220  892 AFGQILLDEQIKDLTPMADRLSLqlensaEDREVNLQLphlehqpppvHLTGWLKGFsa-----sGMIRYRPAsfkgkDL 966  Endozoicomona...
WP_141272071  922 NFGDLEVLENQQAMKELVAEIDFytsnkqPSLPVSLKVqyre---kwlTITGWLDNYyt-----sGLVHYRVGrirskDI 993  Vibrio comitans
WP_067587913  890 AFGQLLLEEQINVVSKMAEQIQTfrdnpgEDREINLQIshpdlsdqpiHITGWLKGFse-----sALVRYRPSsfkgkDL 964  Endozoicomona...
WP_155161238  895 NFGELAIDELCKEATSLAQLVEPw----lKNHKDDVEVnlfl---ndsRLTGWLDGIhh-----hGQVFWRTGklrdkHR 962  Sansalvadorim...
Feature 1                                     #                                                   
1W36_C        978 MQLWLEHLVYCasg-----gngESRLFLRk--dGEWRFPPl--aAEQALHYLSQLIEGYREGMsapllvlPESGGAWLKT 1048 Escherichia coli
WP_017222465  987 LQVWLEHLCFCisvkq-pmattLVHLTAGk--pVVQRLKVi--eQSRARELLFQLLEVYNDGCcqplalfPKTGWVWAKT 1061 Moritella das...
WP_153767389  956 LYGWIEHLCYCavtk----kpgSTRLFALd---KNAHFDPv--dKDIALDHLTTLVKHYLDGMneplaffPETGMVWQQH 1026 Endozoicomona...
WP_034834992  970 LFAWIEHLLYCacqgtskvipgHTRLLGLd---GEILFTPl--pAEQAITYLDDLVALYLQGQtnpvpffPGTSQAWLEK 1044 Endozoicomona...
OQX37862      957 LRYWIEHLCYCacsd----tpaDTAIFGTdk-qGKIAAIP----ADAAKQLLEALVDCYLSGLnapqplfPATSWAWLEA 1027 Oceanospirill...
WP_011769835  994 LTLWLEHLCYCiasg----qnlNSTLLGQk---EGFYFKEl--pADYAYNRISELLALYEAGLqqplpffIQSAFAWCEQ 1064 Psychromonas ...
WP_101746220  967 IRSWIEHLCQCtte-----nptVTRIHDP----EKERLLPvi-pKQEAEQHLSTLIHYFQMGQnlplpwfPETAYSWLKA 1036 Endozoicomona...
WP_141272071  994 LQAWIKHLCACasg-----vavTSHLIGIsskkEIEYFSLaaieQQDALDFLQDLVGLYFEGMtnplpyfPRSAHAATQE 1068 Vibrio comitans
WP_067587913  965 IRHWIEHLCLCmtd------npVATVIFDp---EKCRMLPii-pREQAEKHLVAIIYYFQQGHnlalpwfPQTAMSWLAA 1034 Endozoicomona...
WP_155161238  963 FSAWIQHLCLCaag------kpAPSFYLTa--dTQFRLNPv--ePDQALSYLSDMERLLRDGLsrplpffPKTTWVWLNE 1032 Sansalvadorim...
Feature 1                                         ####                                   
1W36_C       1049 Cydaqnda---mldddsTLQKARTKFLQAYEGNMMVRGEGDDIWYQRlwrqltPETMEAIVEQSQRFLLPL 1116 Escherichia coli
WP_017222465 1062 Kctn----------adpDDYKLRAEALLNFEGGYNRMGENADDYLQRsfprlnDEVYQLMSGFSESVLFPI 1122 Moritella dasanensis
WP_153767389 1027 Fgresgne---ggnesdNTAAAELAARNTFYGGYMKMGESENAYITRiyp-slEDVFPDFKKLSLEIFDPA 1093 Endozoicomonas sp. OPT23
WP_034834992 1045 Ve---------------DDEKARKAAETAFYGGYMHHGEAEDPYIHRifp-elDPIYDDFTNLSRLILEPM 1099 Endozoicomonas numazue...
OQX37862     1028 Ivddgs-------inptQTDKAKDKAHTTYFGGFRLTGESEDRYIQRiypelnDIVFEQMTSLAETLLLPA 1091 Oceanospirillales bact...
WP_011769835 1065 VhklepncfvfddlefaTIAEAQQVASLCFSNDRGFSEGQDPYINRCye--nlEDHWDAFQPLALKIFMPI 1133 Psychromonas ingrahamii
WP_101746220 1037 Dpd-------------dNPDKAEKAAEKAFAGDDFHVRGECSDDYIQrvypelTPVFTEMTSLTREIMAPA 1094 Endozoicomonas acroporae
WP_141272071 1069 Fvkkakk-----gdtdvAREAALGKFSATALGDDYNSGETDDMYIQIawsqwsEELQQRGYQLTERVLLPA 1134 Vibrio comitans
WP_067587913 1035 Dpd-------------dNPDKAEKLALKTFAGDGFIVAGESNDEYIGrvypelEPVMAEFCSISELLMAPA 1092 Endozoicomonas ascidii...
WP_155161238 1033 Vangvti-----sdnenDLEKALSKATDAFYGTGFGGPGESADPYIQrcwpdlESIYPEMIALANTLLLPL 1098 Sansalvadorimonas vero...

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