1Y0K


Conserved Protein Domain Family
Pa4535-like
?
cd22342: Pa4535-like 
Click on image for an interactive view with Cn3D
putative restriction endonuclease similar to Pseudomonas aeruginosa Pa4535
These proteins belong to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Links
?
Statistics
?
PSSM-Id: 411746
Aligned: 19 rows
Threshold Bit Score: 214.851
Created: 14-Feb-2019
Updated: 30-Sep-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
 
putative active
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
Download Cn3D for Viewing 3D StructureScroll to Sequence Alignment Display
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
Feature 1                                           #                            #        #                 
1Y0K_A                    6 YLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWRE 85  Pseu...
PRJNA414589:CR512_03395   6 YLRLLTIQAEQANAFLSNARKWERERWVCQRLLQGLNIPYRSEDFTPAGQEPPDVLFRDAAFEVFFVLDEGRRLNDEWRE 85  Pseu...
ROL71730                  6 YLRLLTIQAEQANAFLSNARKWERERWVCQRLLQGLNIPYRSEDFAAAGQEPPDVLFRDAAFEVFFVLDEGRRLNDEWRE 85  Pseu...
PBD28333                  6 YLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWRE 85  Pseu...
SQF95507                  6 YLRLLTIQAEQANAFLSNARKWERERWVCQRLLQGLNIPHRNEDFTAAGQEPPDVLFRDACFEVFFVLDEGRRLNDEWRE 85  Pauc...
WP_132458678              6 YLRLLTRQAEQANDFLSNARKWDRERWVCQRFLEALNVPYRQEDFAAPGEQPPDVLFKGAGFEVFFVLDEGRRLNEEWRE 85  Pseu...
TAM45550                  6 YLEAQRKAIAESVDFFRSEKKSERERWVVNEFLMNLGFCFTEREVRSVRQDPPDVQFRDAAFEIKEILTEGRRRHQEYKE 85  Gamm...
WP_027800304             26 YLKSVRQALAESVEFFRAEKKTERELWVVCQYLTNLDLCFSETELKSSCQDPPDVLFRDAQFEIKEILSKGRRRHQEYQE 105 Para...
WP_083453362             42 YIEDLKKHTEESITFFSNSMKSERERSVCAAFLRCIGVNFEVKEIVAKKNDPPDVIFDGANFEIRELYEVGRKRHDEYRD 121 Desu...
OGX30655                  6 LIEEHKVNLEESIEFFSDKNKKQRELWVVREFLTSLSMPFQEDELKFVSDEPPDILFRGANFEVKELLDEGRRRHDEYKE 85  Omni...

Feature 1                                                                                                   
1Y0K_A                   86 ELTRRRQAVSLRQLIrree-----------rpqrIAAAELQARLAPTLRKKAHNYSERgid--------hgELDLLAFVN 146 Pseu...
PRJNA414589:CR512_03395  86 ELQRRRSAFSLAQLVrrea-----------rprrISATELLARLAPTLRKKAHNYRERgle--------lnELDIIAFAS 146 Pseu...
ROL71730                 86 ELQRRRSAFSLSQLVrrea-----------rprrISAQELLQRLAPTLRKKSHNYQERgld--------lsELDIIAFAS 146 Pseu...
PBD28333                 86 ELTRRRQAVSLRQLIrrgd------------ytdHTSGLGQRHLQANLVILQKSWADEflrfcalnpracpLLDVSEPGS 153 Pseu...
SQF95507                 86 ELARRRGAFSLSQLVrrea-----------kpkrIPASELLQRLAPTLRKKAHNYQERgld--------lgELDIIAFAS 146 Pauc...
WP_132458678             86 ELTRRRQAVSLRQLIrrvearrglgltgdhphppRQVTLVQWEHIEALGTLLGRPLLPn------------EMRRNIAVA 153 Pseu...
TAM45550                 86 NLDKAVRATKPSDLLedft------------prdTTISDVYVRILKEATTLANEKYPLtv---------rkELDLLFYVN 144 Gamm...
WP_027800304            106 RLRKATKSTSPSDLVehft------------prdVKVSDVYELILAEATRLAAQKYPPav---------rkTLDLLFYVN 164 Para...
WP_083453362            122 RLKELKQAKTINDTLfsie-----------lpkpITYEFLFAGLESALSSKAKKYGAEkc----------fSLDALVYVA 180 Desu...
OGX30655                 86 SLFKSQSAKKFSDLLelyt------------preILIQEVVNLINAKLLNIMYSLGVCk------------NLDILFYVN 141 Omni...

Feature 1                                                                                              
1Y0K_A                  147 LkrAVPDF----NTPFPPPTEYLRQGw-rSLSXVGP---------TFARVLFAh---sGAPEFLRANl-GRSILF 203 Pseudomon...
PRJNA414589:CR512_03395 147 LkrEVLDL----NTHFPPPTEYLRQGw-rSLSLVGP---------TFARVLFAh---pDAPDFLRGNl-GRSIVF 203 Pseudomon...
ROL71730                147 LkrEVLDL----NSHFPPPTEYLRQGw-rSLSLVGP---------TFARVLFAh---pDAPDFLRGNl-GRSIVF 203 Pseudomon...
PBD28333                154 PhfARLGAdidvRSDLPRYRVHRRGQepvEVSDIGTfweadfvafAIGCSFSFeqallDAGIGLRHLelGRNVAM 228 Pseudomon...
SQF95507                147 LkrEVLDL----NSHFPPPTEYLRQGw-rSLSLVGP---------TFARVLFAh---pDAPDFLRTNl-GRSVVF 203 Paucimona...
WP_132458678            154 Gi-NLLSLk--dRRFRLGGALLETTG---WYQPCGRle-----khIDHRTLKSvr--eQGGITARVIgsGVIRLD 215 Pseudomon...
TAM45550                145 Ln-DVFGLi---ETPFPDTASLTSLNw-rSVSFLMG---------YRSCTLVAe---eHAPNFIKDAr-GFIIHR 201 Gammaprot...
WP_027800304            165 Ld-DVFGLv---EAPFPDVSALEALEy-rSVAFVMG---------RRSSTFVAt---sDSPNFIRAAi-GKIVHR 221 Paraburkh...
WP_083453362            181 FpqKFLDI----KSKIPNPNKIEGQGw-rSVSFIIP---------PFGHVVSCr---eDAPKFLRKFe-GKTYME 237 Desulfati...
OGX30655                142 L--QRSGIs---NNDYIIPDEEKWRKwrsICIVEDN---------KLGSVLWAs---eQAPDFLKSVk-GKIIIR 198 Omnitroph...

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap