3R3P


Conserved Protein Domain Family
Hef-like

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cd22328: Hef-like 
Click on image for an interactive view with Cn3D
Hef-like homing endonuclease and similar nucleases
Hef-like homing endonuclease such as I-Bth0305I, which is encoded within a group I intron in the recA gene of a Bacillus thuringiensis bacteriophage and cleaves a DNA target in the uninterrupted recA gene at a position immediately adjacent to the intron insertion site. It belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Statistics
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PSSM-Id: 411732
Aligned: 28 rows
Threshold Bit Score: 103.871
Created: 8-Jun-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
putative activehomodimer
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #                                 #            #    #                   #   
3R3P_B         5 STTPERRVKEILDEm-DIVYFTHHVVe-------GWNVAFYLG-KKLAIEVNGVYWASKQkn-----------vnKDKRK 64  Bacillus phage ...
ASZ76141     244 VHYTQSSIEQFILDlgFDCVETRKIIp-------PYELDIYIPeKKLAIEYDGIYWHSSGsketd-----kiketYHLMK 311 Salmonella phag...
ABI48935     266 VHYTQSSIEQFILDlgFDCVETRKIIp-------PYELDIYIPeKKLAIEYDGIYWHSSGsketd-----kiketYHLMK 333
QBQ80108     252 VHYTQSSIEQFILDlgFDCVETRKIIp-------PYELDIYIPeKKLAIEYDGIYWHSSGsketd-----kiketYHLMK 319
ANH51188     364 MSSFEKELEDLIEV--DYTRNNRKVLd-------GKELDFYLPgYNLAIECNGDYWHSESngk---------dknYHLDK 425 Campylobacter p...
VOH54489     278 RSKAEIEIFDLVKSy-CSDTIHSYNKf-------GFELDIYVPsKNLAIEYNGLYWHSSKhietd-----qkyktYHLDK 344 Pseudomonas pha...
ANH51230     198 NLCPECYPNNTMFEk-ELKEILPKCIkndysvlgDKELDFYLPeYNLAIECNGVYWHSDKfkd----------knYHLNK 266 Campylobacter p...
PJB20465     244 MSYPEVIIKDFLEEn-NIIFSQNNRKii-----sPLELDFYLPdYKLGIELHGLYWHSEKqkp---------dikYHKNK 308 Flavobacteriace...
YP_004956884 208 SSSFEKEVKNILPK--NVIVNNRTVLd-------GKELDFYLPeYNLAIECNGDYWHSKQmgk---------dksYHLEK 269 Campylobacter v...
RUM50986     289 GTIPEQEIVKFLKDk-NITFETNNRNil-----nSFEIDIFIPeKNLGIEVNGIYYHTYEnlihlrglskkeaknYHRLK 362 Hydrogenothermu...
Feature 1                                               
3R3P_B        65 LSELHSKGYRVLTIED-DELNd-----iDKVKQQIQKFW 97  Bacillus phage 0305phi8-36
ASZ76141     312 TEMCEAQGIQLLHIFE-NEWIddt--krEIWKSIIKHKL 347 Salmonella phage SG1
ABI48935     334 TEMCEAQGIQLLHIFE-NEWIddt--krEIWKSIIKHKL 369
QBQ80108     320 TEMCEAQGIQLLHIFE-NEWIddt--krEIWKSIIKHKL 355
ANH51188     426 TNKCLEKGIQLLHIFE-HSWIek----kEIWISIINNKL 459 Campylobacter phage PC5
VOH54489     345 TTTCEQNNIQLLHIFD-NEWHtk----kDIWISVIKNKL 378 Pseudomonas phage vB_PaeM_MIJ3
ANH51230     267 TEKCKEKGIQLLHIFE-SSWIek----kDIWKSIINNKL 300 Campylobacter phage PC5
PJB20465     309 FNLAEQNGINLLQFWE-NEIRdn----fSVIEKMLKYKL 342 Flavobacteriaceae bacterium CG_4_9_14_3_um_filter_33_16
YP_004956884 270 SLKCINKGIYLIHIFE-SKWRsnkqfyiDLIKNHINGTI 307 Campylobacter virus CPX
RUM50986     363 WILATQKNIKLLQFWDsEILNk-----kDIVFSIISNFL 396 Hydrogenothermus sp.

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