2A1I,6SXB


Conserved Protein Domain Family
ERCC1_C-like

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cd22325: ERCC1_C-like 
Click on image for an interactive view with Cn3D
Central domain of ERCC1
ERCC1 is a subunit of the DNA structure-specific endonuclease XPF-ERCC1, which incises a damaged DNA strand on the 5' side of a lesion during nucleotide excision repair. It also plays roles in DNA interstrand crosslink repair and homologous recombination. The ERCC1 central domain modeled here interacts tightly with XPF and may be involved in binding to single-stranded DNA. It belongs to a superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Statistics
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PSSM-Id: 411729
Aligned: 67 rows
Threshold Bit Score: 108.75
Created: 15-Jan-2019
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
XPF interaction
Conserved site includes 29 residues -Click on image for an interactive view with Cn3D
Feature 1:XPF interaction interface [polypeptide binding site]
Evidence:
  • Structure:6SXB: Homo sapiens central domain of ERCC1 binds the DNA endonuclease XPF; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ###                                                          
2A1I_A        18 NSIIVSpRQRGNPV-LKFVRNVp-----WEFg--dVIPDYVLGQSTCALFLSLRYHNLhp-------dyIHGRLQSLgkn 82  human
6SXB_G        99 NSIIVSpRQRGNPV-LKFVRNVp-----WEFg--dVIPDYVLGQSTCALFLSLRYHNLhp-------dyIHGRLQSLgkn 163 human
XP_017493151 149 NTILVNsNQQKNPL-LQSLRSVr-----YVLtdaiSPAHYLLSDSCCALFLSLKYHVIhp-------eyIYERVNELsrg 215 snowberry fruit...
OII73155      24 EMIIASiRQKGNPI-LSHVKNVp-----YEFr--nIVPDFLVGKYDAVVFISIKYHKLhn-------qyLRRRVESLqkn 88  Cryptosporidium...
EJW84471      17 RLIISRkRQEGNPV-LKYIRNVp-----FEWa--dIKADFEAGKEMGILYLSLKWHKLhp-------nyIETRINNDgag 81  Wuchereria banc...
CDO56273     148 RNVIVSpRQKGNPL-LNNISSVp-----WEWg--dILADYLPSPASCVLFLSLRYHRLhp-------eyIQIRMGKLlna 212 Galactomyces ca...
XP_002367267 164 SLLVISlRQKGNPL-LKFITAVph---tFAY----IAPDFLVGPSACVLFLSLRYHQLfp-------syLSKRIEDLadg 228 Toxoplasma gond...
XP_002669432 228 TTIVANeVQKKNPI-VKHIRDKvfklhfTKDw---TLTDYILGRQTTAFYLSLKFHMTkp-------kyILERIKNFhkt 296 Naegleria gruberi
XP_001583144   4 PIVISN-RQKDNPM-IELLKGIpc--nwIED----DCADYIVGSDIGVLFLSLKFHRQyp-------ryLEERVKKFqgn 68  Trichomonas vag...
XP_652464     13 YVIKANlIQKKNYKlLDFIRKR------VEYdpgiKQGDFIVGNMTKIFYLTYKYHSTnikyleecivpLIEQSNEY--- 83  Entamoeba histo...
Feature 1                  #                                              #   #  #  ##  ###### # 
2A1I_A        83 --------faLRVLLVQVDVKDp----------------------------------QQALKELAKMCIlaDCTLILAWs 120 human
6SXB_G       164 --------faLRVLLVQVDVKDp----------------------------------QQALKELAKMCIlaDCTLILAWs 201 human
XP_017493151 216 g-----glyqLKVLLVMVDHVVy----------------------------------EAHLKELTILAVrtNWTLLVAWt 256 snowberry fruit...
OII73155      89 --------ykVRVLLCLVDIPPsg-------------------------------viDAAILEITDICFdlNMTLFLAWs 129 Cryptosporidium...
EJW84471      82 --------yvIKILLVLVNVEP-----------------------------------RHILRELNLFCYrtGWTLMLCYs 118 Wuchereria banc...
CDO56273     213 esassssfqqLKILLVQVDIESh----------------------------------ADALRDLTLISIakGFTILLAWn 258 Galactomyces ca...
XP_002367267 229 -------rytHKFLLLHVDLEVp----------------------------------DAALAQVTLLAFhhCFSLLLGTc 267 Toxoplasma gond...
XP_002669432 297 eic-krgtftNRIILVNVDVHVdacgdssiylsnhqdsqgenggtfkaptyvsetalDEALIEVTRISMwaDWTVICGFs 375 Naegleria gruberi
XP_001583144  69 --------fkSRVLLTLVDVEDp----------------------------------DLAISKLTRTAQgsYMTLVLAFk 106 Trichomonas vag...
XP_652464     84 ----------LNIVLFVIDCKIne-------------------------------inEEIIQDVNIKLFkkKCTLIIAQs 122 Entamoeba histo...
Feature 1          #  ## ### ###    ## ##    
2A1I_A       121 PEEAGRYLETYKAYEq---KPADLLMEK 145 human
6SXB_G       202 PEEAGRYLETYKAYEq---KPADLLMEK 226 human
XP_017493151 257 YEEAARHIEHLRVNAe---KPADVIMGR 281 snowberry fruit fly
OII73155     130 PSEAGQILETLKSHEn---SSNESIRGG 154 Cryptosporidium ubiquitum
EJW84471     119 AEEAAEYLENLHISRn---RNEQSAINA 143 Wuchereria bancrofti
CDO56273     259 EIEAAMYISLLKTHDg---GTAKVIQGQ 283 Galactomyces candidus
XP_002367267 268 LQECAGVLQLLKAYEk---KPADTLLAK 292 Toxoplasma gondii ME49
XP_002669432 376 DEECALYLETIRACEt---KGSSLIQGP 400 Naegleria gruberi
XP_001583144 107 YDEVARWLISMYNTQd---AISDELKAS 131 Trichomonas vaginalis G3
XP_652464    123 YSDAAHYIEEFSVVEnsqnEVSDQINER 150 Entamoeba histolytica HM-1:IMSS

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