1DC1


Conserved Protein Domain Family
BsoBI-like

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cd22315: BsoBI-like 
Click on image for an interactive view with Cn3D
Type II restriction endonuclease BsoBI and similar proteins
BsoBI is a thermophilic PDDEXK-family restriction endonuclease exhibiting both base-specific and degenerate recognition within the sequence C-Y-C-G-R-G. (R = A or G, Y = T or C) A conserved histidine has been proposed to act as a general base in the catalysis. BsoBI belongs to a wider superfamily of nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Statistics
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PSSM-Id: 411719
Aligned: 40 rows
Threshold Bit Score: 335.731
Created: 28-Mar-2011
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1: active site [active site], 6 residue positions
Conserved feature residue pattern:[QEGKS] [ND] [DN] E K HClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1DC1_A        31 FALEKNKRSTPYIERARALKVAASVAktPKDLLYLEDIqdallyasgisdkakk------flteddkkesinnlieNFLE 104 Geobacillus ste...
KXK12883      29 QIQQKTKKAAPYLDNLKALVHALATEddPYTLYLRAEFrsaiiaaclisnksag-------hlvgaaldkivedslVKLK 101 Armatimonadetes...
OGL45914      28 QALKKTEIAEPYIKDALQFWEELKKAsnLNDLIKIDGIrnqlitaagfsdksqs------hlssqelidslkkvldMIAE 101 Candidatus Sche...
OLE97559      23 QALAKTEKATSFIEDARKLYKLLQQAkaIEGVLSLPDIqgaliaasgfsdkara------hlspnelesalkkilqTIAE 96  Cyanobacteria b...
WP_099133947  24 QANEKLRRTESIIKTAQYFAQNANDIetIKDIRDDDTLlefviascmlskksls-------hlstdiqdeiinkliDFSK 96  Xenorhabdus ehl...
WP_104159734  17 IVRGFKWQAEQKLVRANGYFVLADTFlsRNKSLNQAQLisdpklrefllsacmlskk-slghlskaeqdnllktciDFTK 95  Acinetobacter b...
WP_027275879  17 RVQGFSWQAIEKVNRAHTFIECAKYFreHCHTIKSVECirndlmlteyiiascmlsrkslnhlpiniqneiieslvDFSK 96  Leminorella gri...
WP_067337927  17 TVNGFIWQATEKLNRSNQYFANAHYFlnNYIMPENNMMtdnimrafllsacmlsnks-lghlsiteqdaiirnsidFNSI 95  Moraxella atlantae
ODQ12842      17 RIDGFSWQASQKLGKADPYIEIADYAraNIHKVHNVETlrndpllttfiiaacmmskkslshlnismqnkiieeliDFSK 96  Shigella sp. FC569
WP_112065692  17 RIDGFSWQANEKLSRASGFFNHADYFreHKHTIVDVHSlrrdrllteyivascmlsrkslahisiemqneiinrliDFTR 96  Escherichia coli
Feature 1                                          #                                             
1DC1_A       105 PAGEEFIDELIFRYLLFQGDSLGGTMRNIAGALAQQKLTRAIISALdia----niPYKWLDSrdkkytnwmdkpeddyel 180 Geobacillus ste...
KXK12883     102 ANDPEWKEVLVSRAALTWGDALGGSMRNLVGQQAEAGFLDRLVAIL---------RAKGLSPnvgt-------------- 158 Armatimonadetes...
OGL45914     102 FSQDNWREQILYRNLLTKGDSLGGSMRNFTGALASIKFTGAALYALkak----niTPKITSSkgn--------------- 162 Candidatus Sche...
OLE97559      97 KARDDWREEIMYRYLLTQGDTLGGSMRNLTGALAGIQLSKAILIALrerkiapsiHYSPDNPd----------------- 159 Cyanobacteria b...
WP_099133947  97 LNDGEYVSSLQQRYLLTAGDSLGGTMRNVIGQLAQEKLTNSIIAELenrr-lspkPEYNKSNki---------------- 159 Xenorhabdus ehl...
WP_104159734  96 INHPLYERELVNRYFLTSGDALGGVMRNAVGQAAQNLLTNHILKYLqn------nGYQVLIGknnt-------------- 155 Acinetobacter b...
WP_027275879  97 LTDSQYLLELERRYFLTCGDSLGGTMRNVVGQHAQEILTESIFNKLvly---kknPERVRNK------------------ 155 Leminorella gri...
WP_067337927  96 YNNRIYREKLVYRYFLTCGDTLGGVMRNAIGQAAQNVLTSEIIDTLvgw---gitPIEGRNRan---------------- 156 Moraxella atlantae
ODQ12842      97 FNDSNYVQKLERRYLLTCGDSLGGSMRNAVGQNAQQLLGNCIVNRLfnl----gyNPKLIHRs----------------- 155 Shigella sp. FC569
WP_112065692  97 LNDPIYLLELDRRYFLTCGDALGGMMRNVVGQSAQHFITEHIFQRLhnl----nlNPQRITRg----------------- 155 Escherichia coli
Feature 1                            #          #                           # #          #       
1DC1_A       181 etfaKGISWTIngKHRTLMYNITVSLvKKNVDICLFNCEpeiytpqkvhqqPEKYLLLGELKGGIDPAGADEHWKTANTA 260 Geobacillus ste...
KXK12883     159 stggKVNSVSW--GTRIVFLNRTCGIvRNNIDAVLTDATagqp----nlddPSVYIACGELKGGIDPAGADEHWKTARTA 232 Armatimonadetes...
OGL45914     163 --pdKIQMIEW--PGRIILFDKKSKItNTNIDVIYLDITgqkselnyllenRHIHIAMGELKGGIDPAGADEHWKTARSA 238 Candidatus Sche...
OLE97559     160 ----KVQVVEW--PRRLLLFDKKPQFiGKSIDAILLNTEesratrkehmsrQSDCIACGELKGGIDPAGADEHWKTANSA 233 Cyanobacteria b...
WP_099133947 160 ---vAVQWTSHsdEKRCIIFDKKPKFiDKSVDIIVLKGHsaitr---dlenPEDYLCCGELKGGIDPAGADEHWKTAKTA 233 Xenorhabdus ehl...
WP_104159734 156 -gkiTDLTWVEnnEKRTIVFDKKPNFlGKSVDFIVTQGQggnlg---sihnIDEVIGCGELKGGVDPAGADEHWKTARAA 231 Acinetobacter b...
WP_027275879 156 ----AGKTTQIiwEDRRVFFDQKPRFiNNSIDIIVVRGKsaisg---lleaPEDYVCCGELKGGIDPAGADEHWKTAKTA 228 Leminorella gri...
WP_067337927 157 --kiTRLSWEYnnLSKTIFFDQKPSFlGNSVDFVVTQGPintpg---slhdINSINACGELKGGVDPAGADEHWKTARAA 231 Moraxella atlantae
ODQ12842     156 ---dKLVGITW--GDKRISFDQKPKFiDKSVDFIVVRGEsarvg---tlenPSDYICCGELKGGIDPAGADEHWKTAKSA 227 Shigella sp. FC569
WP_112065692 156 ---nKTTQIYW--HNRRVFFDQKPRFiNKSVDIIVVGGNsaina---nlenPNDYICCGELKGGIDPAGADEHWKTAWTA 227 Escherichia coli
Feature 1                                                                       
1DC1_A       261 LTRIRNKFsek-glsPKTIFIGAAIEHSMAEEIWDQLQSGSLTNSANLTKTEQVGSLCRWIIN 322 Geobacillus stearothermophilus
KXK12883     233 LDRIRDQFkte-gyaPKLFFVGAAIESAMADEIFQRLKDGLLSHAANLTKPAQVTDLCEWLIG 294 Armatimonadetes bacterium OLB18
OGL45914     239 LERIRKSFkn---nvPYLFFVGAAIERAMAKEIFDQLIDGRLTHAANLTSNKQLDDLVTWLIS 298 Candidatus Schekmanbacteria bact...
OLE97559     234 LNRIRSSFkk---ncPALFFVGASIAPAMAQEIFDQLKEGRLAYAANLTVPGQLKGLADWLIR 293 Cyanobacteria bacterium 13_1_20C...
WP_099133947 234 LERIISSFgkkeiraPNLVFLGSAIETAMSKEIFSLLESGWLKGAANINYPDQFDEVIDIIIS 296 Xenorhabdus ehlersii
WP_104159734 232 LDRIAQVYtdnnktvPELYFVGAAIEVSMSQEIFSYLQAGRLTGAANLMKTNQLDEVVALIVQ 294 Acinetobacter baumannii
WP_027275879 229 LQRISDVFdrinipkPNLVFLGAAIEMAMANEIFFLLQKNWLAGAANITNAPQLNEVIDIIIK 291 Leminorella grimontii
WP_067337927 232 LRRIEDMYtqnnlnpPELYFIGAAIENSMAREIFQDLQTGKLHGAANLMKPQQLREVVELIIR 294 Moraxella atlantae
ODQ12842     228 LDRIVTAFnskqispPKLVFVGAAIEFAMSYEIFDLLENGWLAGAANILKEEQLHEVIDIIIN 290 Shigella sp. FC569
WP_112065692 228 LNRIHEVFavssiprPRLVFLGAAIENSMAQEIFNLMQNGWLNGAANIRNPTQLQEVIDIIIG 290 Escherichia coli

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