1Y88


Conserved Protein Domain Family
Af1548-like

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cd22308: Af1548-like 
Archeoglobus fulgidus Af1548 and similar putative endonucleases
This family belongs to a superfamily of PDDEXK nucleases including very short patch repair (Vsr) endonucleases, archaeal Holliday junction resolvases, MutH methyl-directed DNA mismatch-repair endonucleases, and catalytic domains of many restriction endonucleases, such as EcoRI, BamHI, and FokI.
Statistics
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PSSM-Id: 411712
Aligned: 22 rows
Threshold Bit Score: 211.725
Created: 7-Jun-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
Conserved Features/SitesClick to see Conserved Features Help
 
putative active
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1: putative active site [active site], 4 residue positions
Conserved feature residue pattern:[EHG] [D] [EDQNH] [KH]Click to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        #                               #            # #                             
1Y88_A     18 YFQGHMVARLLeeh--gfETKTNVIVQGNCVEQEIDVVAerdgERYMIECKFHni-pVYTGLKEAMYTYARFLDVEkh-- 92  Archaeoglobus fulg...
TET13760   87 FVFEKYIAKILrey--gfVAEVGQILNGHCVNHEVDVIAkkenQVCLIECKYHnsrgIKSDIKTALYTHSRFLDIEkayr 164 Actinobacteria bac...
OGW39438   87 YSFEKYFARILtay--gyLVETNRFIEGYCVTHEVDVFAskgtGRFVIECKYHsnggIPTDVKEALYIHSRFSDIKrase 164 Nitrospirae bacter...
OYT30817   90 YPFEHYFAKILedy--gyTVKTNRVIRGKCVSHEIDIVAvkdgKRYLIECKYHnnfgTKTDVKVALYVYARFLDLEe--- 164 Thermofilum sp. ex...
OYT43333   86 NEFEKYICRILkfn--gyQVEWNRIIQGVCIEHQIDCIAvkdrKKYLVECKHHikfhRCTDLDVVMKCWAVLEDIInayr 163 Candidatus Aenigma...
KHO47623   82 ISFEVYVKKVLeah--gyRCTWNKLIKGMNVEHQVDVIAak-eKTFLVECKRHfnphRFTGLNICLQVEARLNDIMlgsr 158 archaeon GW2011_AR5
RLG14430   86 HEFEFFIARLLecegyktQRSPEPMVEGRCIEHEIDVVAtrgaEVAIVECKHHyrdhTFTGLDVPMRQWARLDDIAvgyr 165 Candidatus Nanohal...
PIU61911   90 YTFEDYIAKIFage--gfKVKTKQVYESNCITHELDVVG----DDFFVECKYHnsggITSGIKDVMYSHARFLDLKdack 163 archaeon CG07_land...
OPL17519   87 FVFEKYIARIMrey--gfTAEVGQFIKGYCVEHEVDVVAkkdgKIHLIECKYHnspgTKSDVKTALYVNSRFIDIEkayi 164 delta proteobacter...
RMW35619   92 FAFENYVAAILeyy-dfqVRGIRSKIRGECVTHEIDLIGmkgnKKFLIECKYHskhgIYTGLKESMYTHARFLDMKp--- 167 Nitrosopumilus sp.
Feature 1                                                                                     
1Y88_A     93 -------gFTQPWIFTNTKFSEEAKKYAGCVGIKLTGWSYPEKEGIEVLLESKGLYPITILR-IDKEVLDELVRAGLv-- 162 Archaeoglobus fulg...
TET13760  165 ekdinnntRFEAWLVTNTKCTSDAIKYAGCVGLKILAWHYPKVENLEYFIETKKLYPISILStITEKQRDILFDSDIila 244 Actinobacteria bac...
OGW39438  165 llseqsatVYQGWLVTNTRCTSDAIKYAECVGLKIVSWRYPEKNSLEKMIEDNRLYPVTILPaTKKDSLDTLFRKDIi-- 242 Nitrospirae bacter...
OYT30817  165 -------yFDRAWIATNTKLSLDAIDYAKCVNMKVTAWHYPYNESLEKLIERKKLYPVTILFdLNDEMKLRLLKSGIv-- 235 Thermofilum sp. ex...
OYT43333  164 kr-iidekFDNIWVIVNTKFSEHAKKYARAKRLKLTGWNYPPGESLSSLISDKICYPITILT-NSDKIIERFTKSGIltl 241 Candidatus Aenigma...
KHO47623  159 ng-knnykFDAAWVVTNTKFSDHAKMYAKGVGIRLTGWGYDQDFALEKLVQEKKVLPVTVLK-TDVSVQRGLLNKKIi-- 234 archaeon GW2011_AR5
RLG14430  166 gkrknsinATCAWVVTNTKYSLHARRYSICRAVKLIGWNYPRAGGLNEMIEKHHAYPLTMAG-LSRADRKKLVGSGIy-- 242 Candidatus Nanohal...
PIU61911  164 n---kgyhFRKLWVATNTKFSDECIDYGKYWGLKLMSWKYDGKNSLSYIIDTKHYFPVTLLPsVGREVFSLLSRKNIll- 239 archaeon CG07_land...
OPL17519  165 knhnmthdSIEAMLVTNTKCTSDAIQYARCVGLKIMAWQCPEVENLQYFIEKKRLYPINILPsITVKQKDILFDSNIi-- 242 delta proteobacter...
RMW35619  168 -------kFSGEMIFCNTKVSGNAKKYAKCVGQEIVSWRYPASNSLEKMIERHNLYPITILN-LSQKELQIFSESNImia 239 Nitrosopumilus sp.
Feature 1                   
1Y88_A    163 ----FCRDVVSAGE 172 Archaeoglobus fulgidus
TET13760  245 kelgSYKMDSLAEL 258 Actinobacteria bacterium
OGW39438  243 ----LAQDIAEMDE 252 Nitrospirae bacterium RBG_13_39_12
OYT30817  236 ----FLREFVNTDH 245 Thermofilum sp. ex4484_79
OYT43333  242 gdllETRTDRLQKK 255 Candidatus Aenigmarchaeota archaeon ex4484_56
KHO47623  235 ----TLQDLISEKP 244 archaeon GW2011_AR5
RLG14430  243 ----NVLDFLDADA 252 Candidatus Nanohaloarchaeota archaeon
PIU61911  240 --itEVRDKSDEEL 251 archaeon CG07_land_8_20_14_0_80_38_8
OPL17519  243 ----LVKELLNLKA 252 delta proteobacterium ML8_D
RMW35619  240 --qdLLRYDSHQIS 251 Nitrosopumilus sp.

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