Conserved Protein Domain Family
cc_DmLAMB1-like_C

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cd22302: cc_DmLAMB1-like_C 
C-terminal coiled-coil domain found in Drosophila melanogaster laminin subunit beta-1 (DmLAMB1) and similar proteins
DmLAMB1, also called LanB1, is a glycoprotein required for nidogen (Ndg) localization to the basement membrane. It is a component of laminin, a complex glycoprotein consisting of three different polypeptide chains (alpha, beta, gamma). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration, and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. This model corresponds to the C-terminal coiled-coil domain of DmLAMB1, which may be involved in the integrin binding activity.
Statistics
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PSSM-Id: 411973
Aligned: 24 rows
Threshold Bit Score: 88.8286
Created: 4-Aug-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative trimer
Feature 1:putative trimer interface [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens LAMB1 (5XAU), LAMC1 and LAMA5 form a trimer

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##  ## ##  #      ## ##  #  ##  ## ### ##  #  ## ### ## ### ### ####
P11046       1717 RERAKQLLQRASKLTVDTNAKLKDLNDLQTVYLNKNQQLLRLQAEIGPLNKELNEHLIHIKERGSHYRQC 1786 fruit fly
XP_006825989 1697 LERAEKLKDDATALESETRDKLQELDDIKGDFDNNEDRLGNLADELGDLNDEMSKLLADIERKAQFYRTC 1766 Saccoglossus kowalevskii
XP_005110416 1705 KERAEKLKKRADAIYNSTETKMNELKEIEKKITGNEGRLNKLSDEIKKLNDRMDVLLTEIRDKAKFYETC 1774 California sea hare
XP_023948717 1712 RERAQLLLDKATKLASETQRQLKSLANMEELYNDHNEHLNELEKEIASLNSRMSYYLSEITKRSDYYRSC 1781 squinting bush brown
XP_027202915 1935 KKRAKALKDNASTLLNNVSVKLKSIEDFESDIANNDQKLDDLRRKIEELDNEMKNHLENIERQSKFYRDC 2004 European house dust mite
XP_009058110 1691 QKRAKRLMERADLLAKNTQEKHNKLKKIQGEFDENQKNLVELSNLIDELNRRMEIYLMEIQDKAKYYRDC 1760 owl limpet
XP_030828530 1705 KGRADTLFLNVIAFEEKITKDYEDLQEMETTFNNNNATLHDLTAEIAALNMKMMQILMDIQTKAAYYRSC 1774 purple sea urchin
XP_022099297 1699 RKKAEDLMEEAIAFQERVSSQLDNLRRMQSVFEQNRNTMVDLSSQIEALNMRMMGLLQNIQERSEYYRTC 1768 crown-of-thorns starfish
XP_029637584 1435 KKRAIELQERASKLAVSVTKKNRDLLSLMSSFKQRNETVTLLSEDISELNRKMEKYLEEIKIRAEHYVTC 1504 Octopus vulgaris
ELU17115     1684 KDRADRLRDRASTLYNSTNDRINKLNVVDREFNLNAQVLVDITEEIEELNRRMLAYVTDINNAARNLRNC 1753 Capitella teleta

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