Conserved Protein Domain Family
cc_LAMB4_C

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cd22301: cc_LAMB4_C 
C-terminal coiled-coil domain found in laminin subunit beta-4 (LAMB4)
LAMB4, also called laminin beta-1-related protein, is a component of laminin, a complex glycoprotein consisting of three different polypeptide chains (alpha, beta, gamma). Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration, and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components. Mutations or loss of LAMB4 may be features of gastric and colorectal cancers. Reduced LAMB4 levels may contribute to colonic dysmotility associated with diverticulitis. This model corresponds to the C-terminal coiled-coil domain of LAMB4, which may be involved in the integrin binding activity.
Statistics
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PSSM-Id: 411972
Aligned: 12 rows
Threshold Bit Score: 98.9677
Created: 4-Aug-2020
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative trimer
Feature 1:putative trimer interface [polypeptide binding site]
Evidence:
  • Comment:based on the structure evidence that Homo sapiens LAMB1 forms a trimer with LAMC1 and LAMA5
  • Comment:laminin is a complex glycoprotein consisting of three different polypeptide chains (alpha, beta, gamma)

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           ##  ## ##  #      ## ##  #  ##  ## ### ##  #  ## ### ## ### ### ####
A4D0S4       1690 LGKVKQLKDAAEKLAGDTEAKIRRITDLERKIQDLNLSRQAKADQLRILEDQVVAIKNEIVEQEKKYARC 1759 human
XP_006008498 1740 IKKAKDLQTEAEELLKNITKKTKRLSELEQKITHLNKAKEDKAKQIEALENQVIEIKKNITSATERYATC 1809 coelacanth
XP_018108127 1782 LERLQQLKKEAETLSKEIDNKFQSISDLEEKIDELNKTNQEKANQLIRLEKQAIKLKNDIVTAESTYSTC 1851 African clawed frog
XP_015207963 1729 NEKIEKLKMDAENLAKTVEEKIKLLTDLENRIQDLNKKKEDKANEIANLEEVIQAIRKELLDRGRGYNTC 1798 spotted gar
XP_028668344 1734 QEKAEKLRKEAEDLAKDIADKMQTLAELEDKIKELIKNKEEKANEVSELEAIVKSIRDEIIEKGIGYSTC 1803 reedfish
KAE8295941   1724 GERLTNIVEEVEKMKREMDDKLRQIQDLEDRITRLAQSKKDKAAMVSRLLDMVDSLRKEIYKRAEGYAIC 1793 large yellow croaker
XP_024136727 1612 PHQLTKIAKGAKDFEKEVEDKFKQTQDVEQRIKWLLNRKKQKELQLFQLLKIVYSLRQDILSRVVSYSTC 1681 Indian medaka
XP_023685983 1723 TERLKNITMEAENLRDEIKDKTSRVEELEKRILDLEERKDRKVEEVAELMNEVAGIWAEIARKAAEYSSC 1792 Paramormyrops kingsleyae
XP_031417593 1774 SERVKNITAEVESLAKDVADKMKKIEDLEKRFQKNLQSKEDKENDVARLLEEAADLRREIGQRADAYLKC 1843 Atlantic herring
XP_017569136 1737 NERLNNIKTEAENMAKDIEDKLNEIEVLEKRIQDSAQNKERKMKELEELRLKAEGLNDYIAEKVEHYFLC 1806 red-bellied piranha
NP_001186242 1702 LQKVKQLKEEAEKLAEETEKKIRRITDLEKKLQDLNQTKQDKAEQLRQLEEQVIAIKNEITEQESKYSTC 1771 chicken
Q8JHV6       1756 NERLKNITMEAENLAKHVEDKMKEIEDLEEKILLSNERKDEMRKELEALQKEADDLKKFIVDKVQRYNLC 1825 zebrafish

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