6KTO


Conserved Protein Domain Family
RBD_SHLD3_N

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cd22293: RBD_SHLD3_N 
N-terminal REV7-binding domain of Shieldin complex subunit 3 (SHLD3) and similar proteins
SHLD3, also called REV7-interacting novel NHEJ regulator 1, or Shield complex subunit 3, is a component of the shieldin complex, which plays an important role in the repair of DNA double-stranded breaks (DSBs). During G1 and S phase of the cell cycle, the complex functions downstream of TP53BP1 to promote non-homologous end joining (NHEJ) and suppress DNA end resection. SHLD3 mediates various NHEJ-dependent processes including immunoglobulin class-switch recombination, and fusion of unprotected telomeres. The model corresponds to the N-terminal REV7-binding domain of SHLD3, which contains a REV7-binding FXPWFP motif.
Statistics
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PSSM-Id: 412089
Aligned: 18 rows
Threshold Bit Score: 76.1835
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramerFXPWFP motif
Conserved site includes 46 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ######### #  #   ## # ##########  ##########    ############   
6KTO_C         3 TEVILHYRPCESDPt-QLPKIAEKAIQDFPTRPLSRFIPWFPYDgs-kLPLRPKRSPPVISEE 63  human
XP_030049057   3 VDVVLHYRPNQNDPn-KLQNLVEKVLKKFSTRRLPEFIPWFPNDl--kLPFKPKMLPPVISGD 62  Microcaecilia unicolor
XP_018613857   1 MDVVLHYKSQQGNLs-NLVNIAEKSLEEFPCRTIPPFTPWFPSGsdtsLPLKPDKSPPVVSLE 62  Asian bonytongue
CDQ77254       7 MDVLLHYKSIDGSLk-ILVDKTEKALEDFPCRVLPIFTPWFPPEsdklLPIRPLKSPPIISLE 68  rainbow trout
XP_030620907   1 MDIVLHYKDGQGRLn-DLLLATKNALEEFPCRVLPVFKPWFPSGldrsLPIKPRNAPPVISSE 62  milkfish
TSL10173       1 MDVCLYYKSDKDKLd-DLVCVSEKVLEKFPHRVLPVFTPWFPSGtersCPIKPKNPPPVILSN 62  goonch
XP_012671390   1 MDVVLHYKNNKDGPs-DMVIFSERALEDFTRRILSAFEPWFPTHkdlcLPIRPQKAPPVVLPE 62  Atlantic herring
CAG12589      10 EDVVLHYLPRSDARlsSQLETTEKLLNPFPCRPPPVFTPWFSDSh---LPIRPAKSAPVISSF 69  spotted green pufferfish
XP_028852312   1 MDVVLHHRRQDGDLr-ALLLAAGRAAQDLRPRLLPAFTPWFPTGgdtsLPVRPAKPAPVVGPP 62  denticle herring
XP_028312463   2 EDVVLHVRPSACEQleSLLQSTERLLKPFPLRAPPLFKPWFIAAnq-pLPIRPAKPAPIIKHT 63  blunt-snouted clingfish

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