3D30,2BH0,4FFT,4JCW,4JS7


Conserved Protein Domain Family
DPBB_EXLX1-like

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cd22272: DPBB_EXLX1-like 
Click on image for an interactive view with Cn3D
N-terminal double-psi beta-barrel fold domain of bacterial expansins similar to Bacillus subtilis EXLX1
This subfamily is composed of bacterial expansins including Bacillus subtilis EXLX1, also called expansin-YoaJ. Similar to plant expansins, EXLX1 contains an N-terminal domain (D1) homologous to the catalytic domain of glycoside hydrolase family 45 (GH45) proteins but with no hydrolytic activity, and a C-terminal domain (D2) homologous to group-2 grass pollen allergens. It strongly binds to crystalline cellulose via D2, and weakly binds soluble cellooligosaccharides. Bacterial expansins, which are present in some plant pathogens, have the ability to loosen plant cell walls, but with weaker activity compared to plant expansins. They may have a role in plant-bacterial interactions. This model represents the N-terminal domain of EXLX1 and similar bacterial expansins, which adopts a double-psi beta-barrel (DPBB) fold.
Statistics
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PSSM-Id: 439252
Aligned: 60 rows
Threshold Bit Score: 86.0841
Created: 23-Jul-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
chemical
Conserved site includes 4 residues -Click on image for an interactive view with Cn3D
Feature 1:chemical substrate binding site [chemical binding site]
Evidence:
  • Structure:4JCW; Clavibacter michiganensis expansin in complex with cellopentaose, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                           ## #                                                 #       
3D30_A         6 LHEGYATYTGs----gYSGGAFLLDpip--sdmEITAINPADLNyggvkaaLAGSYLEVEGPk-GKTTVYVTDLYPeg-- 76  Bacillus subtilis
4JCW_A         2 TTHGRATHYSlgqgntIANGNCSMPavp--adrMYVAVSSPEYSga----aACGTFLDVTGPk-GTVRVQVADQCHgc-- 72  Clavibacter mic...
XP_006816165  27 IVHGDATFYSwadvaaAGKGACGYDvtnvgytmEIAAIDSGRWDds----kSCGMCIEITGPtgDTLEVIVVDQCMtc-- 100 Saccoglossus ko...
WP_136936498   3 TSKGEAVYYDa-----NARGSCSLTfgh---daAVLSAPNAVYNqi----qACGQCLEITGSe-GTQVVMVADRCNdc-- 67  Polyangium fumosum
XP_006816406  35 PFSGEITHYDyaddaaAGAGACMIDteg---diMVGAMNVPDLDel----lMCGQCVEITNDigVKIVIIIVDSCPechl 107 Saccoglossus ko...
XP_006812919  10 TYSGEATFYYgaataaAGSGACMINtgg---dlMIGAMTAALWDes----qACGECVEVTGPqgDTVFIQIIDLCAgc-- 80  Saccoglossus ko...
RKP23455      38 VHKGEATFYDs-----DGRGHCSLDpsg---dgIFGAMASALWSta----aVCGVCAEITHKd-KTVRVPIVDECPsc-- 102 Syncephalis pse...
ORY88014      77 PLKGQATWYGn----dGSGGACSLPgrs--sdlKFAAFSGAKWDns----aNCGACVRVTGPn-GVIDVQIIDECPec-- 143 Leucosporidium ...
APU50764      28 QFQGRATYFHaap-amAGNGACMLAsd----dpMVVGMAGANYEns----qVCGECIEVTGPqgNSVVVSVIDMCGce-- 96  Saccoglossus ko...
RYE90352      56 ESKGEASFYSt-----DGKGSCSLNppp---nrMILAASKDVYQsa----qACGACLEVSGGa-GKMVVQVMDLCFtc-- 120 Myxococcales ba...
Feature 1                                      
3D30_A        77 -arGALDLSPNAFRKIgnm-kdGKINIKWR 104 Bacillus subtilis
4JCW_A        73 -evGHLDLSEEAFRALgdf-naGIIPISYV 100 Clavibacter michiganensis subsp. michiganensis NCPPB 382
XP_006816165 101 -tdGSLDLSEKGFTAIsgg-kiGMAEITWK 128 Saccoglossus kowalevskii
WP_136936498  68 -ppDRLVINKPAFVKIagt-kaGKAEVTWK 95  Polyangium fumosum
XP_006816406 108 kheHNIDLSQPAFELLypl-qrGRVMITWR 136 Saccoglossus kowalevskii
XP_006812919  81 -peGDINLSTDAFTQLgnl-edGRIDIEWK 108 Saccoglossus kowalevskii
RKP23455     103 -saGSIDLSRGAFRALaae-saGRIDISWK 130 Syncephalis pseudoplumigaleata
ORY88014     144 -aaGSLDLSTSAFSKIapi-srGVVPITWE 171 Leucosporidium creatinivorum
APU50764      97 --eNGLNLSQESFRILesdvsfGSIDVTWR 124 Saccoglossus kowalevskii
RYE90352     121 -ppGHLVLSKPAFEATvgk-ndGKGPITWR 148 Myxococcales bacterium

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