5N8A


Conserved Protein Domain Family
PrimPol_RBD

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cd22256: PrimPol_RBD 
C-terminal RPA-binding domain (RBD) of DNA-directed primase/polymerase protein and similar proteins
DNA-directed primase/polymerase protein (PrimPol), also called coiled-coil domain-containing protein 111, is a DNA primase-polymerase required for the maintenance of genome integrity. It facilitates mitochondrial and nuclear replication fork progression by initiating de novo DNA synthesis using dNTPs and acting as an error-prone DNA polymerase able to bypass certain DNA lesions. PrimPol is regulated by single-stranded DNA binding proteins. This model corresponds to the C-terminal RPA-binding domain (RBD) of PrimPol, which interacts directly with the RPA70N domain of RPA70.
Statistics
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PSSM-Id: 412077
Aligned: 14 rows
Threshold Bit Score: 70.8962
Created: 30-Sep-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
RPA70N bindingRBM-A motif
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:RPA70N binding site [polypeptide binding site]
Evidence:
  • Structure:5N8A: Homo sapiens PrimPol in complex with RPA1 through its RPA70N domain; contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
5N8A_X        21 MTTDEADETRSNETqnphkpsp------------srlstgaSADAVWDNGi-----------DDAYFLEATEDAELAEAA 77  human
Q96LW4       479 FTTDEADETRSNETqnphkpsp------------srlstgaSADAVWDNGi-----------DDAYFLEATEDAELAEAA 535 human
XP_025005397 487 TDERENTEVTSHSNpadlsess------------aylaintSQDTQWDNAs-----------DDAYLVETAEDVELAEAA 543 chicken
KQK77629     364 AHKSNNIMFSITTWdlsp--------------------isfPTDSEWDNAs-----------DDACFLEATEDVELAEAA 412 blue-fronted am...
GCF47097     493 MDGNGNIEEKANMQnstglslaak--------sesmgqnrrPSSVELDDEl-----------DDICFLEASEDVELADAV 553 Paroedura picta
XP_029440815 476 MDEAGSVKERKIKLlsdqtwlsetksvpllteavdctaespDSDTDWTNGi-----------EDEYCVEATEDAELVEAA 544 two-lined caeci...
XP_013910219 487 TIGENNTEERANTVdttglldsmpft----smqensklnkkSSNVEWDHE------------FDACLLEASEDVELIEAT 550 Thamnophis sirt...
KAE8629806   470 MDENGNIKETKINRslvp-------------------madkPSIARSGETmgpwerhcdseiDDACILEAIEDIEFSDAV 530 tropical clawed...
XP_018086033 480 MDENGNIKETKINRchvlfad-------------gylppqkPSMPRSGNTmasgerhsgseiDDACILEATEDVEFVNAV 546 African clawed ...
Q6P1E7       456 KDEDFTSGETDDTStsltkdsqtp--------pscnlsaggLSAAAWDDE------------DDALFLEATEDAEFADAA 515 house mouse
Feature 1                                                                                        
5N8A_X        78 Enslls------------------------------------------------------------------------yn 85  human
Q96LW4       536 Enslls------------------------------------------------------------------------yn 543 human
XP_025005397 544 Dyslg--------------------------------------------------------------------------- 548 chicken
KQK77629     413 Ndsln--------------------------------------------------------------------------- 417 blue-fronted am...
GCF47097     554 Tnlhpq------------------------------------------------------------------------kn 561 Paroedura picta
XP_029440815 545 Endvmr-------------------------------------------------------------------------w 551 two-lined caeci...
XP_013910219 551 Difhtq------------------------------------------------------------------------rn 558 Thamnophis sirt...
KAE8629806   531 Dtslah------------------------------------------------------------------------le 538 tropical clawed...
XP_018086033 547 Dtslapldlddvqfsgedvefanavdnslahldlddvqfsgedivfanavdtslahlnleipdediefanavdtslahld 626 African clawed ...
Q6P1E7       516 Dksl---------------------------------------------------------------------------- 519 house mouse
Feature 1            #### ####  
5N8A_X        86 sevDEIPDELIIEVL 100 human
Q96LW4       544 sevDEIPDELIIEVL 558 human
XP_025005397 549 ydtEEIPDEVLLEMS 563 chicken
KQK77629     418 yamEEIPDEILLEAL 432 blue-fronted amazon
GCF47097     562 wdvDEIPDELLIDAL 576 Paroedura picta
XP_029440815 552 dcePEIPDKLLWEAC 566 two-lined caecilian
XP_013910219 559 ctvDEIPDELLADVL 573 Thamnophis sirtalis
KAE8629806   539 lddVGIPDEDIAFVN 553 tropical clawed frog
XP_018086033 627 sedVEIPDEDIEFAN 641 African clawed frog
Q6P1E7       520 gsmDDIPDELIIEAL 534 house mouse

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